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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Hydronephrosis
1 gene
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1 of 1 corroborated by 2+ sources
UMOD(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Bilateral generalized polymicrogyria Trigeminal neuralgia
1 gene
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1 of 1 corroborated by 2+ sources
GRIN1(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Congenital sodium diarrhea Intestinal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A3(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 172 →
Corneal disease ehlers-danlos syndrome, classic type
1 gene
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1 of 1 corroborated by 2+ sources
COL5A1(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Corneal endothelial dystrophy Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A11(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 75 →
Corneal disease Corneal endothelial dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KRT3(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Demyelinating hereditary motor and sensory neuropathy Rothmund-thomson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 80 →
Hereditary corneal dystrophy Thiel-behnke corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune pancreatitis Thyrotoxic periodic paralysis
1 gene
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1 of 1 corroborated by 2+ sources
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Thyrotoxic periodic paralysis Tongue cancer
1 gene
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0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Renovascular hypertension Vestibular disease
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Tonic-clonic epilepsy Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Corneal disease White spongue nevus
1 gene
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1 of 1 corroborated by 2+ sources
KRT4(5)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 222 →
Congenital structural myopathy X-linked myotubular myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MTM1(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Congenital pes cavus X-linked progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
GJB1(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Growth hormone insensitivity syndrome Specific learning disability
1 gene
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GHR(1)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Growth hormone insensitivity, partial Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
GHR(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Paranoia Parapsoriasis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Paralysis Parkinson-dementia complex of guam
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Periapical periodontitis Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
FGF2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 330 →
Neonatal diabetes mellitus with congenital hypothyroidism Periprosthetic osteolysis
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(6)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 394 →
Duane retraction syndrome Primary adrenal insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
CUX1(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Paranoia Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Congenital nonspherocytic hemolytic anemia Pyruvate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Diabetes complications qualitative platelet defect
1 gene
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1 of 1 corroborated by 2+ sources
ABCC4(3)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.