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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
primary ciliary dyskinesia 13 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 14 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CCDC39(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 15 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CCDC40(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 19 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 26 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
CFAP298(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
primary ciliary dyskinesia 3 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
DNAH5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
primary ciliary dyskinesia 35 Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
ODAD4(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 46 →
Graft-versus-host disease Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Proximal symphalangism
1 gene
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1 of 1 corroborated by 2+ sources
NOG(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Atrial myxoma Cushing syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
autosomal systemic lupus erythematosus type 16 Crest syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 25 →
BBS10-related ciliopathy Postaxial polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Atypical femoral fracture Skeletal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
CHST3(3), GALNS(2)
0.034 0.087 1.38e-3 2.17e-3 ✓ sig. —
Ataxia, spastic, autosomal dominant Presynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VAMP1(4)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 34 →
Blepharocheilodontic syndrome Ductal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(6)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Bombay phenotype Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 106 →
Cushing's disease Familial ventricular tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
GNAI2(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Familial ventricular tachycardia Hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
ABCA5(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Coloboma, ocular, with or without hearing impairment, cleft lip/palate, and/or impaired intellectual development Hyperphosphatasia with intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Colonic polyps Macrothrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(4)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Congenital cataract facial dysmorphism neuropathy syndrome Posterior subcapsular cataract
1 gene
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GJA3(1)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 43 →
Congenital lamellar cataract Lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
HSF4(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 43 →
Andersen-tawil syndrome Short qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ2(6)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Angiocentric glioma Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
QKI(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.