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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Neurodegeneration with brain iron accumulation PLA2G6-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G6(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bronchial hyperreactivity platelet-type bleeding disorder 12
1 gene
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1 of 1 corroborated by 2+ sources
PTGS1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Endocrine system disease Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 153 →
Cholangitis progressive familial intrahepatic cholestasis type 3
1 gene
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1 of 1 corroborated by 2+ sources
ABCB4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anophthalmia progressive retinal dystrophy due to retinol transport defect
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis progressive retinal dystrophy due to retinol transport defect
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hyperopia Seborrheic dermatitis
3 genes
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1 of 3 corroborated by 2+ sources
PRICKLE2(1), MYRF(2), SGPL1(1)
0.026 0.081 8.91e-4 1.58e-3 ✓ sig. —
Hemorrhoid Ileocolitis
2 genes
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PHLDB2(1), PLCXD2(1)
0.021 0.250 9.04e-4 1.58e-3 ✓ sig. —
Bladder exstrophy and epispadias complex Cystic kidney disease
2 genes
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PKD1(1), LRRC37A2(1)
0.038 0.077 9.38e-4 1.63e-3 ✓ sig. —
Hemiplegia Ovarian diseases
1 gene
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1 of 1 corroborated by 2+ sources
CGA(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Chilblain lupus erythematosus hereditary breast carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ATRIP(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Arachnoid cysts Hereditary hyperekplexia
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(3)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Arachnoid cysts Hyperekplexia
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(3)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Congenital stenosis of aortic valve Hypocalcemic vitamin d-dependent rickets
1 gene
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1 of 1 corroborated by 2+ sources
VDR(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Dias-logan syndrome Hemoglobin e disease
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(4)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Congenital iris coloboma Dyschromatosis symmetrica hereditaria
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(7)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Congenital respiratory system anomaly Cyanosis
1 gene
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1 of 1 corroborated by 2+ sources
TGFB2(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Corticobasal syndrome Dowling degos disease
1 gene
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1 of 1 corroborated by 2+ sources
ADAM10(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Aortic rupture Coumarin resistance
1 gene
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1 of 1 corroborated by 2+ sources
VKORC1(3)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
Bronchus cancer Coumarin resistance
1 gene
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1 of 1 corroborated by 2+ sources
CYP2A6(3)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. Cluster 294 →
Desbuquois dysplasia Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(4)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. Cluster 128 →
Coronal craniosynostosis Extraskeletal myxoid chondrosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. Cluster 127 →
Bronchus cancer familial sleep-related hypermotor epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA4(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
familial sleep-related hypermotor epilepsy Respiratory system cancer
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA4(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. —
14q11.2 microduplication syndrome Congenital ptosis
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(2)
0.125 0.333 9.74e-4 1.67e-3 ✓ sig. Cluster 279 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.