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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Osteochondroma Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
PTPN11(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Latent autoimmune diabetes in adults spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Eye neoplasms Temperature-sensitive oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
TYR(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Megaloblastic anemia Thiamine-responsive megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Lipoma Thiamine-responsive megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 37 →
Thyrotoxic periodic paralysis X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Cachexia TNF receptor 1-associated periodic fever syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Tonic-clonic epilepsy Trismus
1 gene
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1 of 1 corroborated by 2+ sources
BCHE(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital structural myopathy TPM3-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paralysis Trismus
1 gene
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1 of 1 corroborated by 2+ sources
BCHE(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 378 →
Congenital stationary night blindness TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 151 →
Congenital nonspherocytic hemolytic anemia Uridine monophosphate hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NT5C3A(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 87 →
dyskeratosis congenita, autosomal dominant 2 Urinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TERT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Lipoma Uterine benign neoplasm
1 gene
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BET1L(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 37 →
Congenital aneurysm of ascending aorta Vascular ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Megaloblastic anemia Vitamin b12-unresponsive methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
Vitamin b deficiency Vitamin b12-unresponsive methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
Rothmund-thomson syndrome Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked dominant hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked hypophosphatemia
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Intestinal neoplasms xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 104 →
Xeroderma pigmentosum xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.