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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Intestinal vascular insufficiency Paralytic strabismus
1 gene
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NEDD9(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Autoimmune pancreatitis Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Intrahepatic bile duct cancer Tongue cancer
1 gene
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0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Laryngeal neoplasms Wernicke-korsakoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular excitation abnormality Bile duct disorder
1 gene
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1 of 1 corroborated by 2+ sources
PRKAG2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 318 →
Autoimmune interstitial lung disease-arthritis syndrome Cold autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP12(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Benign hypercalcemia Hypocalcemia
1 gene
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1 of 1 corroborated by 2+ sources
CASR(7)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Benign myoclonic epilepsy Cri-du-chat syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTNND2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Bifid uvula Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Cervical disc degenerative disorder Diaphyseal bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Collagen vi-related myopathy Diffuse mesangial sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
COL4A4(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 49 →
Dihydrolipoamide dehydrogenase deficiency Methemoglobinemia
1 gene
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1 of 1 corroborated by 2+ sources
CYB5R3(5)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Dominant hypophosphatemia with nephrolithiasis and/or osteoporosis Fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC34A1(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 99 →
Duane-radial ray syndrome Laryngeal disease
1 gene
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1 of 1 corroborated by 2+ sources
IPO8(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Ductus arteriosus, patent Hypercapnia
1 gene
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NPPA(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Dyschromatopsia Retinitis punctata albescens
1 gene
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EYS(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Dyssegmental dysplasia Stuve-wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Embryonal carcinoma Hypereosinophilic syndrome
1 gene
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TNFSF8(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Hallermanns syndrome Right ventricular hypertrophy
1 gene
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GJA1(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Axenfeld-rieger syndrome Saldino-mainzer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT140(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Bile duct disease Erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
FECH(8)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 158 →
Blepharocheilodontic syndrome Trigeminal nerve disease
1 gene
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1 of 1 corroborated by 2+ sources
CTNND1(7)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 312 →
Blepharocheilodontic syndrome Lobular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Brachydactyly-elbow wrist dysplasia syndrome Clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Axenfeld-rieger syndrome Brittle cornea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRDM5(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.