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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hepatic fibrosis Hypercholanemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hereditary hemophagocytic lymphohistiocytosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hypercalcemic tumoral calcinosis Idiopathic infantile hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Arachnoid cysts Hyperexplexia hereditary
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Dystonia, dopa-responsive, with or without hyperphenylalaninemia Hyperphenylalaninemia
1 gene
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1 of 1 corroborated by 2+ sources
SPR(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hyperphosphatemic tumoral calcinosis Idiopathic infantile hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
KL(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Basal cell nevus syndrome Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Autoimmune polyendocrine syndrome Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
AIRE(7)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Epidermolytic palmoplantar keratoderma Pachyonychia congenita
1 gene
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1 of 1 corroborated by 2+ sources
KRT16(6)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Colorectal cancer susceptibility Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD7(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 410 →
Pregnancy disorder Spinal cord compression
1 gene
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TNF(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 300 →
Aortic arch syndrome Parapsoriasis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Periapical periodontitis Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
FGF2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 330 →
Contracture of multiple joints Posterior column ataxia with retinitis pigmentosa
1 gene
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FLVCR2(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Cervical disc degenerative disorder Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Exanthema Recurrent multifocal osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 216 →
Exanthema Mevalonate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital malformation syndromes associated with short stature Urethral syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Aortic arch syndrome Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Embryonal nuclear cataract Vertebral anomalies with endocrine and t-cell dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
DICER1(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Vascular remodeling Whim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CXCR2(5)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 136 →
Osteogenic sarcoma Woolly hair
1 gene
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1 of 1 corroborated by 2+ sources
RB1(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Cockayne syndrome Xfe progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Intellectual disability with craniofacial anomalies and cardiac defects Vein of galen aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Collagen vi-related myopathy Intellectual disability, autism, speech apraxia, craniofacial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A3(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 49 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.