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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Atrophy STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atrophy hyper-IgE recurrent infection syndrome 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atypical absence epilepsy Childhood absence epilepsy
1 gene
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NPY(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Atypical fanconi syndrome monogenic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Autoimmune uveitis Delirium
1 gene
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CXCL8(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 76 →
Autoimmune uveitis Esotropia
1 gene
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1 of 1 corroborated by 2+ sources
CXCL8(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 76 →
autosomal recessive osteopetrosis 2 Bone resorption
1 gene
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1 of 1 corroborated by 2+ sources
TNFSF11(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 262 →
Avoidant restrictive food intake disorder Delirium
1 gene
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1 of 1 corroborated by 2+ sources
APOE(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
BBS10-related ciliopathy Saldino-noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Beckwith-wiedemann syndrome Hemihyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Beta-ketothiolase deficiency Carbohydrate metabolism disease
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Perisylvian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
dyskeratosis congenita, autosomal dominant 2 Head and neck cancer
1 gene
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1 of 1 corroborated by 2+ sources
TERT(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Angiofollicular ganglionic hyperplasia Headache
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Angiolymphoid hyperplasia Headache
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Castleman disease Headache
1 gene
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IL6(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Deafness, x-linked hearing loss, X-linked 6
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
hearing loss, X-linked 6 Leiomyoma
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 49 →
Heme oxygenase deficiency Vascular system injury
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(7)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 371 →
Hengel maroofian schols syndrome Ureterolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
BCAS3(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Hepatoerythropoietic porphyria Porphyria
1 gene
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1 of 1 corroborated by 2+ sources
UROD(6)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
hereditary spherocytosis Spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 168 →
Deep vein thrombosis hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Dwarfism heyn-sproul-jackson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
hyperinsulinemic hypoglycemia, familial, 2 monogenic diabetes
1 gene
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KCNJ11(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.