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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Intracranial aneurysm Vesicoureteral reflux
2 genes
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2 of 2 corroborated by 2+ sources
ENG(2), SOX17(6)
0.038 0.133 6.10e-4 1.21e-3 ✓ sig. —
Brain infarction Hemophilia a
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DQA1(1), PLAT(2)
0.039 0.125 6.25e-4 1.24e-3 ✓ sig. —
Birdshot chorioretinopathy Parapsoriasis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Blepharitis Respiratory system neoplasm
1 gene
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MC1R(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 1 →
Bloom syndrome Dysfibrinogenemia
1 gene
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1 of 1 corroborated by 2+ sources
UNG(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Boichis syndrome Coach syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMEM67(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 306 →
Bronchiolitis obliterans Polymyalgia rheumatica
1 gene
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MBL2(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Bronchus cancer Cri-du-chat syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TERT(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 294 →
Calcium pyrophosphate deposition Paget disease
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Capillary leak syndrome Constipation
1 gene
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1 of 1 corroborated by 2+ sources
PON1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Capillary leak syndrome Hematologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PON1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cardiofacial dysplasia Male breast carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PRKACB(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Congenital neck anomaly Congenital nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
NEB(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 51 →
Congenital ptosis Intellectual developmental disorder autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 279 →
Cataract-intellectual disability-hypogonadism syndrome Congenital ptosis
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Congenital short qt syndrome Haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
KCNH2(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Congenital diarrhea Congenital sodium diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 172 →
Congenital stenosis of aortic valve Isolated systolic hypertension
1 gene
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APOB(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 140 →
Cri-du-chat syndrome Respiratory system cancer
1 gene
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1 of 1 corroborated by 2+ sources
TERT(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 294 →
Autoimmune hemolytic anemia Degenerative polyarthritis
1 gene
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TLR8(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 321 →
Chilblain lupus erythematosus Deoxyguanosine kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 150 →
Desmoplastic small round cell tumor Ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
EWSR1(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 35 →
Desmoplastic small round cell tumor Extraskeletal myxoid chondrosarcoma
1 gene
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EWSR1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
46,xx sex reversal Genetic panhypopituitarism
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Arthralgia Disseminated superficial actinic porokeratosis
1 gene
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1 of 1 corroborated by 2+ sources
MVK(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.