Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Benign paroxysmal torticollis of infancy Cyclin-dependent kinase-like 5 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
CACNA1A(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 61 →
Berardinelli-seip congenital lipodystrophy Carotid intima-media thickness
1 gene
Show details
PPARG(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 71 →
Bethlem myopathy dystonia 27
1 gene
Show details
1 of 1 corroborated by 2+ sources
COL6A3(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 393 →
Bilateral cleft lip Cleft lip with or without cleft palate
1 gene
Show details
PLEKHA5(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 312 →
Clubfoot nail-patella syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
LMX1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Benign infantile epilepsy neonatal encephalopathy with non-epileptic myoclonus
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNQ2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Hypocalcemia neonatal severe primary hyperparathyroidism
1 gene
Show details
1 of 1 corroborated by 2+ sources
CASR(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Choreoathetosis NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction
1 gene
Show details
1 of 1 corroborated by 2+ sources
NKX2-1(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
46,xx ovotesticular disorder of sex development NR5A1-related sex development disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
NR5A1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 38 →
Adenomatous polyposis NTHL1-deficiency tumor predisposition syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
NTHL1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
NTHL1-deficiency tumor predisposition syndrome Tuberous sclerosis complex
1 gene
Show details
1 of 1 corroborated by 2+ sources
NTHL1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 70 →
Congenital hyperinsulinism obsolete hyperinsulinism due to short chain 3-hydroxylacyl-CoA dehydrogenase deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
HADH(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
obsolete Stüve-Wiedemann syndrome Stuve-wiedemann syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
LIFR(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Osteochondroma Right ventricular hypertrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
PTPN11(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cafe-au-lait spots Osteoma cutis
1 gene
Show details
1 of 1 corroborated by 2+ sources
GNAS(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypocalcemia Osteoma cutis
1 gene
Show details
GNAS(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Other epidermolysis bullosa PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
PLEC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Other specified diabetes mellitus with unspecified complications Wolfram syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
WFS1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Bilateral multicystic dysplastic kidney Ovarian mucinous adenocarcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Ovarian mucinous adenocarcinoma Renal dysplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Giant cell tumor of tendon sheath Ovarian mucinous adenocarcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Multicystic dysplastic kidney Ovarian mucinous adenocarcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
HNF1B(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Congenital muscular hypertrophy-cerebral syndrome De lange syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SMC1A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 297 →
Congenital musculoskeletal anomalies Lymphedema-distichiasis syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
FOXC2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital musculoskeletal anomalies Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
Show details
FOXC2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.