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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital hyperinsulinism Hyperinsulinism-hyperammonemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 36 →
Eye pain Hypocalcemia
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypocalcemia Rhabdomyoma
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypomyelinating leukodystrophy 2 Pelizaeus-merzbacher disease
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypomyelinating leukodystrophy 3 Pelizaeus-merzbacher disease
1 gene
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1 of 1 corroborated by 2+ sources
AIMP1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypoplasminogenemia Laryngeal disease
1 gene
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1 of 1 corroborated by 2+ sources
PLG(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 155 →
Idiopathic diabetes Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Idiopathic diabetes Interleukin 2 receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Idiopathic diabetes immunodeficiency due to CD25 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
16q24.3 microdeletion syndrome Congenital retrognathism
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
17-beta-hydroxysteroid dehydrogenase deficiency Disorders of sex development
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 344 →
1p21.3 microdeletion syndrome Anal polyp
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 349 →
3-hydroxyacyl-coa dehydrogenase deficiency Congenital hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
HADH(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Adams-oliver syndrome NOTCH1-related AOS spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Adenomatous polyposis Brain tumor-polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
APC(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Adenomatous polyposis Familial adenomatous polyposis
1 gene
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1 of 1 corroborated by 2+ sources
APC(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Adenomatous polyposis gastric adenocarcinoma and proximal polyposis of the stomach
1 gene
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1 of 1 corroborated by 2+ sources
APC(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Agat deficiency Fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 99 →
Alpha-methylacyl-coa racemase deficiency Congenital bile acid synthesis defect
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Alpha-methylacyl-coa racemase deficiency Hereditary sensory and motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 190 →
amyotrophic lateral sclerosis type 1 Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Anal polyp Dihydropyrimidine dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 349 →
Anterior compartment syndrome Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 371 →
Anterior compartment syndrome Pancreatic diseases
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Aortic arch syndrome Autoimmune pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.