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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Deafness, aminoglycoside-induced Infantile liver failure
1 gene
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1 of 1 corroborated by 2+ sources
TRMU(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Deafness, dystonia, and cerebral hypomyelination Encephalitis
1 gene
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ABCD1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Dermatosparaxis ehlers-danlos syndrome Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Familial mediterranean fever Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 57 →
Follicular cyst Hyperalphalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Crst syndrome Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Glanzmann thrombasthenia Hyper-immunoglobulin e syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGB3(8)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Corneal opacity Gm1 gangliosidosis
1 gene
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1 of 1 corroborated by 2+ sources
GLB1(7)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Blepharophimosis syndrome Granulosa cell tumor of ovary
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Myoclonic epilepsy with ragged red fibers Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hereditary angiopathy with nephropathy, aneurysms, and muscle cramps Neuropathic spinal arthropathy
1 gene
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KAT6B(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Congenital palmoplantar and perioral keratoderma of olmsted Olmsted syndrome, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS2(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 332 →
Desmoid tumor Osteopathia striata with cranial sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Blue cone monochromatism Deuteranomaly
1 gene
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1 of 1 corroborated by 2+ sources
OPN1MW(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 214 →
Developmental delay with language impairment and movement disorder Intellectual developmental disorder speech autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
TBR1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 275 →
Diffuse mesangial sclerosis Digenic alport syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A4(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 49 →
Donnai-barrow syndrome Vitamin d deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LRP2(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Duane-radial ray syndrome Vissers-bodmer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IPO8(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 144 →
Dysphonia Mitochondrial hepatopathy
1 gene
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TWNK(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 97 →
Amyloid neuropathy Early onset alzheimers disease with behavioral disturbance
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 116 →
Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome Thiel-behnke corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TBCD(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome Lipoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPT2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Congenital scoliosis Ectopia lentis
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Crst syndrome Ectopia lentis
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Dilatation of pulmonary artery Ectopia lentis
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.