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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia cutis congenita with epibulbar dermoids Toriello-carey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 40 →
Apnea Paresis
1 gene
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1 of 1 corroborated by 2+ sources
BCHE(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 378 →
Apolipoprotein a-i deficiency Ataxia with vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Arachnoid cysts Retinitis pigmentosa, juvenile cataract, short stature, intellectual disability syndrome
1 gene
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GPHN(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Arthrogryposis-renal dysfunction-cholestasis syndrome Congenital scoliosis
1 gene
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FBN1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Crst syndrome
1 gene
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FBN1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Dilatation of pulmonary artery
1 gene
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FBN1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Asthenozoospermia Cholesterol embolism
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 123 →
Asthenozoospermia Intracranial embolism and thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 123 →
Asthenozoospermia Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
BSCL2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Atrial standstill Hypercapnia
1 gene
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1 of 1 corroborated by 2+ sources
NPPA(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 129 →
Atrial standstill Cardiac rhythm disease
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 129 →
Atrial standstill Ectopic rhythm
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 129 →
Autoimmune pancreatitis Benign mucous membrane pemphigoid with ocular involvement
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Autoimmune pancreatitis Bouillaud’s disease
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Autoimmune pancreatitis
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
autosomal recessive polycystic kidney disease Polycystic kidney disease with tuberous sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PKD1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Becker generalized myotonia Hyperkalemic periodic paralysis
1 gene
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CLCN1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Benign epithelial tumor of salivary glands Well-differentiated liposarcoma
1 gene
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HMGA2(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 342 →
Bietti crystalline corneoretinal dystrophy Diastolic heart failure
1 gene
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1 of 1 corroborated by 2+ sources
ABCA4(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Bifunctional enzyme deficiency Fatty acid metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B4(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 99 →
Craniometaphyseal dysplasia Hallermanns syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Haploinsufficiency Mycosis fungoides
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Haploinsufficiency Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
KCNH2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Aphasia Hematoma
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.