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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Erythrocytosis due to tissue hypoxemia Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VHL(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 385 →
Esophageal and gastric varices Esophageal varices
1 gene
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1 of 1 corroborated by 2+ sources
SST(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 270 →
Esophageal stenosis Sengers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Esophageal stenosis Extrinsic allergic alveolitis
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Extraskeletal ewing sarcoma Paris-trousseau thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
FLI1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 309 →
Extraskeletal ewing sarcoma Peripheral primitive neuroectodermal tumor
1 gene
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FLI1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 309 →
Extrinsic allergic alveolitis Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 300 →
Doyne honeycomb retinal dystrophy Factor h deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CFH(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 107 →
Familial infantile convulsions with paroxysmal choreoathetosis Paroxysmal dystonic choreoathetosis
1 gene
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1 of 1 corroborated by 2+ sources
PRRT2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 58 →
Dysphasia fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Focal palmoplantar keratoderma with joint keratoses Keratosis palmoplantaris striata
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
FOXC1-related anterior segment dysgenesis Rieger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 253 →
fructose-1,6-bisphosphatase deficiency Galactokinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FBP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 405 →
Galactokinase deficiency Glucocorticoid receptor deficiency/resistance
1 gene
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1 of 1 corroborated by 2+ sources
NR3C1(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 405 →
galactose epimerase deficiency Galactosemia
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 340 →
Galactose mutarotase deficiency Galactosemia
1 gene
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1 of 1 corroborated by 2+ sources
GALM(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 340 →
Galactosemia Udp-glucose-hexose-1-phosphate uridylyltransferase
1 gene
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1 of 1 corroborated by 2+ sources
GALT(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 340 →
Galactosemia Udp-glucose 4-epimerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 340 →
Brain tumor-polyposis syndrome Gastrointestinal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
Familial adenomatous polyposis Gastrointestinal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
APC(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
gastric adenocarcinoma and proximal polyposis of the stomach Gastrointestinal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
Gata2 deficiency Primary graft dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 136 →
GATA6-related congenital heart disease with or without pancreatic agenesis or neonatal diabetes Middle aortic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA6(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
generalized epilepsy-paroxysmal dyskinesia syndrome Paroxysmal nonkinesigenic dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 58 →
Doyne honeycomb retinal dystrophy Genetic hemolytic uremic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 107 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.