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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiogenetic disease Repolarization syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNB2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 404 →
cardiomyopathy, dilated, 2l dilated cardiomyopathy 1C
1 gene
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LDB3(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Carnitine deficiency Systemic primary carnitine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Carvajal syndrome Erythrokeratodermia-cardiomyopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DSP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 201 →
Casgid syndrome Glutaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLS(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Casgid syndrome infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 362 →
Cataract-corneal dystrophy syndrome PAX6-related ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 74 →
Blindness Optic neuritis
2 genes
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1 of 2 corroborated by 2+ sources
EFEMP1(2), AQP4(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Bronchial hyperreactivity Congestive ophthalmopathy
2 genes
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2 of 2 corroborated by 2+ sources
ICAM1(2), IL1RN(2)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Byzanthine arch palate Congenital epicanthus
2 genes
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TFAP2A(1), PTK2(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Angle closure glaucoma Carotid artery stenosis
2 genes
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1 of 2 corroborated by 2+ sources
APOE(2), MTHFR(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Bicuspid aortic valve Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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1 of 2 corroborated by 2+ sources
ATP6(2), ATP8(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Cystitis Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
NGF(2), POMC(2)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Essential thrombocythemia Nephrosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), FGF2(2)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Cushing's disease Gliosarcoma
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), PPARG(2)
0.077 0.182 5.54e-5 2.33e-4 ✓ sig. —
Paralysis Tremor
2 genes
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1 of 2 corroborated by 2+ sources
SCN4A(2), ATP7A(1)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
inherited retinal dystrophy Nanophthalmos
2 genes
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2 of 2 corroborated by 2+ sources
CRB1(2), C1QTNF5(2)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Hypertensive heart disease Potassium deficiency
2 genes
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FGF5(1), PRDM8(1)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Carcinogenesis Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), CDKN2A(2)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. Cluster 3 →
Clinodactyly Esotropia
2 genes
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ANKRD11(1), FASN(1)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Intervertebral disc disease Uremia
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), SPARC(2)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. Cluster 180 →
Dwarfism Seckel syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TRAIP(5), PLK4(4)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Prostatic intraepithelial neoplasia Substance-induced psychosis
2 genes
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ESR1(1), GSTP1(1)
0.074 0.182 6.27e-5 2.33e-4 ✓ sig. —
Gaucher disease Retinitis pigmentosa-deafness syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(7), CDH23(1)
0.074 0.182 6.27e-5 2.33e-4 ✓ sig. Cluster 118 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.