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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ataxia Episodic ataxia
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(5), CACNB4(5)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
Bone neoplasms Ruptured abdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
MMP9(2), TGFBR2(2)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
Bone neoplasms Ruptured aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
MMP9(2), TGFBR2(2)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
3m syndrome Desbuquois syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CCDC8(4), CUL7(5), OBSL1(3)
0.005 1.000 4.97e-5 2.25e-4 ✓ sig. —
Benign prostatic hyperplasia Hemoglobin e disease
2 genes
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BCL11A(1), HBS1L(1)
0.051 0.400 5.00e-5 2.26e-4 ✓ sig. —
Distal myopathy Frontotemporal dementia with or without amyotrophic lateral sclerosis
2 genes
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2 of 2 corroborated by 2+ sources
VCP(6), SQSTM1(7)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Hydronephrosis Hyperemia
2 genes
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2 of 2 corroborated by 2+ sources
AGT(2), PTGS2(2)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Myofibrillar myopathy
2 genes
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2 of 2 corroborated by 2+ sources
LDB3(3), BAG3(6)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. Cluster 4 →
Megaloblastic anemia Pancytopenia
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(3), DHFR(6)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Oculocutaneous albinism Waardenburg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TYR(6), MITF(7)
0.080 0.154 5.11e-5 2.30e-4 ✓ sig. —
Occupational disease Senile cataract
2 genes
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2 of 2 corroborated by 2+ sources
ERCC2(2), XRCC1(2)
0.080 0.154 5.11e-5 2.30e-4 ✓ sig. —
Vascular remodeling Vasculitis
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), SENP1(2)
0.059 0.333 5.11e-5 2.31e-4 ✓ sig. Cluster 136 →
Berylliosis Gaucher disease
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), TNF(2)
0.077 0.200 5.14e-5 2.32e-4 ✓ sig. —
Gaucher disease Vascular system injury
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), TNF(2)
0.077 0.200 5.14e-5 2.32e-4 ✓ sig. —
Headache Hodgkin disease
2 genes
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CSF3(1), IFNA2(1)
0.077 0.200 5.14e-5 2.32e-4 ✓ sig. —
Ischemic stroke Moyamoya disease
4 genes
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2 of 4 corroborated by 2+ sources
MTHFR(2), MYRF(2), HLA-A(1), PHACTR1(1)
0.036 0.078 5.17e-5 2.33e-4 ✓ sig. —
lesch-nyhan syndrome Partial hypoxanthine-guanine phosphoribosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Lethal neonatal rigidity and multifocal seizure syndrome Rigidity and multifocal seizure syndrome, lethal neonatal
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Lethal neonatal rigidity and multifocal seizure syndrome neurodevelopmental disorder with cerebellar atrophy and with or without seizures
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Lethal neonatal rigidity and multifocal seizure syndrome neonatal-onset encephalopathy with rigidity and seizures
1 gene
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1 of 1 corroborated by 2+ sources
BRAT1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
leukemia, acute lymphoblastic, susceptibility to, 3 PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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PAX5(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
liberfarb syndrome Short stature skeletal dysplasia retinal degeneration intellectual disability hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PISD(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Limb-mammary syndrome Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Limb-mammary syndrome Sweat gland neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Lipoatrophic diabetes mellitus Severe lipodystrophic laminopathy
1 gene
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1 of 1 corroborated by 2+ sources
LMNA(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 65 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.