Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
neurodevelopmental disorder with epilepsy, spasticity, and brain atrophy Non-specific syndromic intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
TRAPPC4(3)
0.003 1.000 2.39e-2 2.57e-2 ✓ sig. Cluster 6 →
Congenital stromal corneal dystrophy Epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SPARCL1(3)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
Epilepsy Lewis lung carcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
Autism-epilepsy syndrome Parkinson disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
BCKDK(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Genetic generalized epilepsy Parkinson disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
TNK2(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Multiple sclerosis X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
Show details
1 of 1 corroborated by 2+ sources
GABRA3(4)
0.002 1.000 3.74e-2 3.93e-2 ✓ sig. —
Autism-epilepsy syndrome Intellectual developmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 5.25e-2 5.42e-2 —
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Intellectual developmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
PIGG(4)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder Intellectual developmental disorder seizures epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
AP2M1(4)
0.001 1.000 5.25e-2 5.42e-2 —
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Neurodevelopmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
PIGG(4)
0.001 1.000 6.09e-2 6.25e-2 —
Intellectual developmental disorder seizures epilepsy Neurodevelopmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
AP2M1(4)
0.001 1.000 6.09e-2 6.25e-2 —
NACC1-related neurodevelopmental disorder with epilepsy, cataracts and episodic irritability Neurodevelopmental disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
NACC1(6)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
Neurodevelopmental disorder neurodevelopmental disorder with epilepsy, spasticity, and brain atrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
TRAPPC4(5)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
Neurodevelopmental disorder neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
Neurodevelopmental disorder neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
Show details
1 of 1 corroborated by 2+ sources
NARS1(6)
0.001 1.000 6.09e-2 6.25e-2 —
NACC1-related neurodevelopmental disorder with epilepsy, cataracts and episodic irritability Obesity
1 gene
Show details
1 of 1 corroborated by 2+ sources
NACC1(2)
0.001 1.000 7.75e-2 7.87e-2 —
Bipolar disorder X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
Show details
1 of 1 corroborated by 2+ sources
GABRA3(4)
0.001 1.000 7.92e-2 8.03e-2 —
Autism Autism-epilepsy syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
Show details
1 of 1 corroborated by 2+ sources
GABRA3(5)
0.001 1.000 9.50e-2 9.60e-2 —
Congenital hypotonia, epilepsy, developmental delay, and digital anomalies Schizophrenia
1 gene
Show details
1 of 1 corroborated by 2+ sources
ATN1(4)
0.000 1.000 1.65e-1 1.66e-1 —

Showing 20 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.