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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cleft lip and cleft of alveolar process of maxilla Congenital anomaly of limb
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), IRF6(2)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Developmental venous anomaly Hydrops fetalis
2 genes
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RASA1(1), CCNH(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Necrosis Vascular dementia
6 genes
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6 of 6 corroborated by 2+ sources
APP(2), MGMT(2), LPL(2), MTHFR(2), PRNP(2), TNF(2)
0.034 0.109 6.09e-6 3.11e-5 ✓ sig. —
Clear cell renal cell carcinoma Thyroid cancer
4 genes
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TERT(1), SLK(1), STN1(1), CNEP1R1(1)
0.047 0.118 6.24e-6 3.18e-5 ✓ sig. —
Neurodegeneration with brain iron accumulation Neurodegenerative disorder
3 genes
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3 of 3 corroborated by 2+ sources
FTL(3), PANK2(3), FTH1(6)
0.057 0.214 6.25e-6 3.19e-5 ✓ sig. —
Coronary restenosis Heart valve disease
3 genes
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3 of 3 corroborated by 2+ sources
ACE(2), SPP1(2), ITGB2(2)
0.057 0.214 6.25e-6 3.19e-5 ✓ sig. —
Carney complex Cowden disease
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(3), SDHC(3)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 81 →
Cowden disease Hemimegalencephaly
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(5), PIK3CA(7)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. —
Congenital arteriovenous malformation Congenital venous anomaly
2 genes
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EPHB4(1), TEK(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. —
Congenital deformity of clavicle Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Central nervous system non-hodgkin lymphoma Pulmonary alveolar proteinosis
2 genes
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1 of 2 corroborated by 2+ sources
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 1 →
Osteosarcoma Sarcoma
4 genes
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1 of 4 corroborated by 2+ sources
TP53(3), GSTP1(1), SOX2(1), BCOR(1)
0.046 0.121 6.37e-6 3.24e-5 ✓ sig. —
Diffuse cutaneous systemic sclerosis MHC class I deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TAP2(2), TAP1(2)
0.080 0.667 6.40e-6 3.25e-5 ✓ sig. —
Congenital clubfoot Neuropathic spinal arthropathy
2 genes
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COL5A1(1), KAT6B(1)
0.080 0.667 6.40e-6 3.25e-5 ✓ sig. —
Gastrointestinal disease Hematologic disease
3 genes
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2 of 3 corroborated by 2+ sources
MTHFR(2), JAK2(1), MTR(2)
0.063 0.167 6.51e-6 3.31e-5 ✓ sig. —
Bronchopulmonary dysplasia Senile cataract
3 genes
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GSTP1(1), GSTT1(1), GSTM1(1)
0.054 0.231 6.54e-6 3.32e-5 ✓ sig. —
Arachnodactyly Byzanthine arch palate
2 genes
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1 of 2 corroborated by 2+ sources
FBN1(2), NSDHL(1)
0.118 0.400 6.57e-6 3.34e-5 ✓ sig. Cluster 381 →
Congenital hemangioma Uveal melanoma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(2), GNAQ(3)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
Cutis marmorata telangiectatica congenita Uveal melanoma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(3), ARL6IP6(2)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
Ataxia, spastic, autosomal dominant Myasthenic syndrome
2 genes
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1 of 2 corroborated by 2+ sources
TAPBPL(1), VAMP1(5)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. Cluster 34 →
Nephronophthisis Nephronophthisis-like nephropathy
2 genes
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2 of 2 corroborated by 2+ sources
XPNPEP3(6), SLC41A1(4)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
B-cell chronic lymphocytic leukemia Urologic neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), CCND1(2)
0.133 0.250 6.60e-6 3.35e-5 ✓ sig. Cluster 3 →
Accessory skin tag Ruptured abdominal aortic aneurysm
2 genes
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ELN(1), EFEMP2(1)
0.133 0.250 6.60e-6 3.35e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.