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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dyskinesia Movement disorder
4 genes
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4 of 4 corroborated by 2+ sources
PDYN(2), DRD2(2), OPRM1(2), GNAO1(3)
0.050 0.154 2.37e-6 1.30e-5 ✓ sig. —
Blepharoptosis Centronuclear myopathy
3 genes
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1 of 3 corroborated by 2+ sources
RYR1(3), CHRND(1), OPA1(1)
0.077 0.158 2.42e-6 1.32e-5 ✓ sig. —
Iron metabolism disorder Polycythemia
3 genes
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2 of 3 corroborated by 2+ sources
HFE(2), JAK2(3), TMPRSS6(1)
0.077 0.158 2.42e-6 1.32e-5 ✓ sig. —
Seborrheic dermatitis Uveal melanoma
4 genes
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HERC2(1), IRF4(1), SGPL1(1), UNC5B(1)
0.054 0.108 2.42e-6 1.33e-5 ✓ sig. Cluster 162 →
Bone neoplasms Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
PTGS2(2), MMP9(2), MMP2(2)
0.077 0.150 2.46e-6 1.34e-5 ✓ sig. —
Sarcoma Senile cataract
3 genes
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3 of 3 corroborated by 2+ sources
ERCC2(2), GSTP1(2), ATM(2)
0.068 0.231 2.53e-6 1.38e-5 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Colobomatous optic disc macular atrophy chorioretinopathy syndrome
2 genes
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1 of 2 corroborated by 2+ sources
SIX6(4), C14orf39(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. Cluster 56 →
Gallbladder neoplasms Soft tissue neoplasms
2 genes
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1 of 2 corroborated by 2+ sources
ERBB4(2), EPHB1(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. —
Cowchock syndrome Spondyloepimetaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. —
Cortical dysplasia with other brain malformations Polymicrogyria
3 genes
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3 of 3 corroborated by 2+ sources
DYNC1H1(3), ADGRG1(4), TUBB2B(4)
0.075 0.176 2.53e-6 1.38e-5 ✓ sig. —
Bone fracture Dupuytren contracture
6 genes
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FMN2(1), RAB31(1), CHSY1(1), SFRP4(1), STARD3NL(1), PRKAR1B(1)
0.039 0.088 2.58e-6 1.41e-5 ✓ sig. Cluster 299 →
Epidermal nevus Urinary bladder cancer
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(4), KRAS(2), HRAS(3)
0.042 0.429 2.60e-6 1.42e-5 ✓ sig. —
Brain infarction Proteinuria
4 genes
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4 of 4 corroborated by 2+ sources
APOE(2), HLA-DQA1(2), CYBB(2), ALOX5AP(2)
0.053 0.111 2.64e-6 1.44e-5 ✓ sig. —
Congenital cystic eyeball Klippel-feil syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GDF6(5), GDF3(5)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 56 →
46,xx ovotesticular disorder of sex development 46,xy sex reversal
2 genes
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NR5A1(1), SRY(1)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 38 →
46,xy disorder of sex developmen Disorders of sex development
2 genes
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2 of 2 corroborated by 2+ sources
AKR1C2(3), HSD17B3(3)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 344 →
Adenomatous polyposis Focal cortical dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(3), NTHL1(4)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Rickets Vitamin d dependent rickets
2 genes
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2 of 2 corroborated by 2+ sources
VDR(5), CYP27B1(6)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 396 →
Megacystis microcolon intestinal hypoperistalsis syndrome Visceral neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
NDE1(1), ACTG2(6)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 220 →
Chiari-frommel syndrome Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Cockayne syndrome Testicular neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
ERCC1(3), ERCC4(3)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Macular telangiectasia neurometabolic disorder due to serine deficiency
2 genes
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2 of 2 corroborated by 2+ sources
PHGDH(2), PSPH(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Mitochondrial myopathy Myoclonic epilepsy with ragged red fibers
2 genes
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2 of 2 corroborated by 2+ sources
IL1A(2), IL1B(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. Cluster 32 →
Concentric hypertrophic cardiomyopathy Polymorphic catecholaminergic ventricular tachycardia
2 genes
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CACNA1C(1), MYBPC3(1)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Congenital afibrinogenemia Cor pulmonale
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGG(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. Cluster 149 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.