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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arteriovenous hemangioma Hereditary hemorrhagic telangiectasia
2 genes
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1 of 2 corroborated by 2+ sources
ENG(7), RASA1(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Arteriovenous hemangioma Congenital venous anomaly
2 genes
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GLMN(1), TEK(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 261 →
Bestrophinopathy Iron overload
2 genes
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2 of 2 corroborated by 2+ sources
BEST1(7), FTH1(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Bonnevie-ullrich syndrome Ureteral calculi
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), SOD1(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 285 →
Breast disease Congenital foot deformity
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), PTHLH(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 27 →
Autoimmune polyendocrine syndrome Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Developmental venous anomaly Hereditary hemorrhagic telangiectasia
2 genes
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RASA1(1), CCNH(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Autoimmune polyendocrine syndrome Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Cortical dysplasia Focal cortical dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
TBR1(1), TSC1(3)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Intestinal disaccharide malabsorption Prediabetes
2 genes
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HK1(1), GCK(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Larsen syndrome Marshall syndrome
3 genes
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1 of 3 corroborated by 2+ sources
XYLT2(1), PLOD3(1), GZF1(3)
0.088 0.176 1.07e-6 6.26e-6 ✓ sig. —
Cutaneous mastocytosis Secondary malignant neoplasm
3 genes
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HBE1(1), HBG2(1), OR51B5(1)
0.088 0.176 1.07e-6 6.26e-6 ✓ sig. Cluster 235 →
Digestive system disease Hemorrhoid
7 genes
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NF1(1), ANO1(1), FOXP1(1), ELN(1), TMEM270(1), ABO(1), FAM185A(1)
0.040 0.079 1.07e-6 6.27e-6 ✓ sig. —
Anorexia Graves ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.088 0.167 1.08e-6 6.32e-6 ✓ sig. Cluster 147 →
Eating disorder Generalized anxiety disorder
5 genes
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ASB3(1), MGMT(1), TMEM106B(1), ADGRL4(1), IFI44(1)
0.046 0.125 1.12e-6 6.56e-6 ✓ sig. Cluster 69 →
Desmoid tumor Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(2), APC(6)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Deep vein thrombosis Heparin cofactor 2 deficiency
2 genes
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1 of 2 corroborated by 2+ sources
PI4KA(1), SERPIND1(5)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Congenital afibrinogenemia Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGB(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Congenital fibrinogen deficiency Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGB(3)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Congenital hypofibrinogenemia Deep vein thrombosis
2 genes
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FGA(1), FGB(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Afibrinogenemia Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(2), FGB(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Brachycephaly Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), TWIST1(6)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Brain edema Hematoma
2 genes
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S100B(1), PLAT(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Brain edema Spinal cord compression
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), PLAT(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.