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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Nasopharyngeal neoplasms Oropharyngeal neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
0.067 0.750 8.10e-8 5.76e-7 ✓ sig. Cluster 1 →
Hemoglobin e disease Lepore-beta-thalassemia syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), HBD(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 19 →
Hyperuricemic nephropathy Juvenile hyperuricemic nephropathy
2 genes
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2 of 2 corroborated by 2+ sources
REN(5), UMOD(3)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. —
Li-fraumeni syndrome Vulvar lichen sclerosus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(7), CDKN2A(3)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 3 →
Paroxysmal familial ventricular fibrillation Ventricular arrhythmia
2 genes
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1 of 2 corroborated by 2+ sources
DSP(1), RYR2(3)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. —
Paroxysmal familial ventricular fibrillation Paroxysmal ventricular fibrillation
2 genes
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2 of 2 corroborated by 2+ sources
DPP6(2), SCN5A(3)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. —
Bloch sulzberger syndrome Glucose-6-phosphate dehydrogenase deficiency
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(3), IKBKG(1)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 87 →
Brain small vessel disease Cerebral small vessel disease
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(5)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 198 →
Brain small vessel disease Vascular leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(6)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 198 →
Brain small vessel disease Congenital porencephaly
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(5)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 198 →
Brain small vessel disease Posttraumatic porencephalic cyst of brain
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(2), COL4A1(5)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 198 →
Burn-mckeown syndrome Choanal atresia syndrome
2 genes
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2 of 2 corroborated by 2+ sources
POLR1A(3), TXNL4A(6)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 144 →
Apert syndrome Cataract-intellectual disability-hypogonadism syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 48 →
Autoinflammatory disease, systemic, x-linked Glucose-6-phosphate dehydrogenase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
G6PD(3), IKBKG(3)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 87 →
17p13.3 microduplication syndrome Miller-dieker syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PAFAH1B1(2), YWHAE(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 223 →
Acromegaly Growth hormone-secreting pituitary adenoma
2 genes
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1 of 2 corroborated by 2+ sources
AIP(1), GPR101(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 82 →
Anaplasia Intraductal noninfiltrating carcinoma
2 genes
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CA9(1), HIF1A(1)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 124 →
Anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema Glucose-6-phosphate dehydrogenase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
G6PD(3), IKBKG(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 87 →
Ankle fracture Upper extremity fracture
2 genes
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CPED1(1), WNT16(1)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. —
Jervell and lange-nielsen syndrome Long qt syndrome, digenic
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ1(7), KCNE1(6)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. —
methemoglobinemia, alpha type Thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(2), HBA2(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(2), HBA2(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 72 →
Uinary system neoplasms Urogenital neoplasms
2 genes
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SLC2A13(1), WDR11(1)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 3 →
Urogenital neoplasms Vulvar lichen sclerosus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), CDKN2A(2)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 3 →
Cortisone reductase deficiency Hyperandrogenism
2 genes
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2 of 2 corroborated by 2+ sources
HSD11B1(6), H6PD(6)
0.333 1.000 8.44e-8 5.94e-7 ✓ sig. Cluster 339 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.