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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Minor epilepsy Seasonal affective disorder
1 gene
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NPY(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Benign myoclonic epilepsy Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(4)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 357 →
Benign infantile epilepsy familial sleep-related hypermotor epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
familial sleep-related hypermotor epilepsy Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 273 →
Cone-rod synaptic disorder Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Anorexia Atypical absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chorea Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Anorexia Minor epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Developmental regression neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Potassium deficiency Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Benign neonatal epilepsy Hemiplegia
1 gene
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1 of 1 corroborated by 2+ sources
SCN2A(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 165 →
Bladder disease Epilepsy with myoclonic atonic seizures
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A1(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Benign mesial temporal lobe epilepsy Febrile convulsion
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy congenital muscular dystrophy with intellectual disability and severe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DPM2(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Febrile convulsion neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Developmental delay with or without epilepsy Short-rib thoracic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Early onset epilepsy with developmental delay Familial adult myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →
Adult myoclonic epilepsy Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →
Amish infantile epilepsy syndrome Latent autoimmune diabetes in adults
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Periapical periodontitis Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
FGF2(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 330 →
Tonic-clonic epilepsy Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
17-beta-hydroxysteroid dehydrogenase deficiency Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B3(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 1A Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 1 Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
C9orf72(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.