Pathways column key: KEGG Reactome

Disease Term	Disease ID	Gene Symbol	Classification	References	Source	Pathways
CHRONIC KIDNEY DISEASE	EFO_0003884	SLC35B3	Unknown	27647854	GWAS catalog	Transport and synthesis of PAPS Transport of nucleotide sugars
		SLC47A1	Unknown	31152163	GWAS catalog	Transport of bile salts and organic acids, metal ions and amine compounds
		SLC6A13	Unknown	20383146	GWAS catalog	Synaptic vesicle cycle GABAergic synapse Na+/Cl- dependent neurotransmitter transporters +1 more
		SLC7A9	Unknown	20383146	GWAS catalog	Protein digestion and absorption Basigin interactions Amino acid transport across the plasma membrane +2 more
		SND1	Unknown	40465716	GWAS catalog	Viral carcinogenesis Signaling by BRAF and RAF fusions
		SNRPB2	Unknown	40465716	GWAS catalog	Spliceosome mRNA Splicing - Major Pathway
		SOS2	Unknown	39024449	GWAS catalog	EGFR tyrosine kinase inhibitor resistance Endocrine resistance MAPK signaling pathway +49 more
		SOX11	Unknown	20383146	GWAS catalog	—
		SPI1	Unknown	31152163	GWAS catalog	Osteoclast differentiation Human T-cell leukemia virus 1 infection Pathways in cancer +3 more
		SPTBN1	Unknown	31152163	GWAS catalog	Cytoskeleton in muscle cells NCAM signaling for neurite out-growth Interaction between L1 and Ankyrins +2 more
		STAB1	Unknown	40465716	GWAS catalog	Efferocytosis Scavenging by Class H Receptors
		STAC	Unknown	31537649 35763030	GWAS catalog	—
		STC1	Unknown	20383146 31152163	GWAS catalog	—
		STEAP1B	Unknown	21546767	GWAS catalog	—
		SVIP	Unknown	21546767	GWAS catalog	Protein processing in endoplasmic reticulum Neutrophil degranulation
		SYN2	Unknown	29703844	GWAS catalog	Serotonin Neurotransmitter Release Cycle Dopamine Neurotransmitter Release Cycle
		SYPL2	Unknown	20383146	GWAS catalog	—
		TALDO1	Unknown	26420894	GWAS catalog	Pentose phosphate pathway Metabolic pathways Carbon metabolism +6 more
		TAPT1	Unknown	27647854	GWAS catalog	—
		TBC1D21	Unknown	29703844	GWAS catalog	—
		TCEA3	Unknown	31152163	GWAS catalog	—
		TCF7L2	Unknown	39024449	GWAS catalog	Wnt signaling pathway Hippo signaling pathway Adherens junction +26 more
		TENM2	Unknown	27647854	GWAS catalog	—
		TET3	Unknown	21546767	GWAS catalog	—
		TFDP2	Unknown	20383146	GWAS catalog	Cell cycle Activation of NOXA and translocation to mitochondria Transcription of E2F targets under negative control by DREAM complex +13 more
		THSD7A	Unknown	31178898	GWAS catalog	Defective B3GALTL causes Peters-plus syndrome (PpS) O-glycosylation of TSR domain-containing proteins
		TMEM18	Unknown	40465716	GWAS catalog	—
		TMEM250	Unknown	29703844	GWAS catalog	—
		TMEM60	Unknown	20383146	GWAS catalog	—
		TMOD4	Unknown	30226566	GWAS catalog	Cytoskeleton in muscle cells Striated Muscle Contraction
		TPPP	Unknown	39024449	GWAS catalog	—
		TRIM49B	Unknown	31152163	GWAS catalog	—
		UBE2Q2	Unknown	20383146	GWAS catalog	Ubiquitin mediated proteolysis Synthesis of active ubiquitin: roles of E1 and E2 enzymes Antigen processing: Ubiquitination & Proteasome degradation
		UMOD	Unknown	19430482 20383146 20686651 25493955 26831199 29124443 32541925 39024449	GWAS catalog	Asparagine N-linked glycosylation
		UNCX	Unknown	31152163	GWAS catalog	—
		USP38	Unknown	39024449	GWAS catalog	—
		VEGFA	Unknown	20383146	GWAS catalog	EGFR tyrosine kinase inhibitor resistance MAPK signaling pathway Ras signaling pathway +30 more
		VPS33B	Unknown	30226566	GWAS catalog	Prevention of phagosomal-lysosomal fusion
		WDR37	Unknown	20383146	GWAS catalog	—
		WDR72	Unknown	20383146 29124443 31152163 39024449 40465716	GWAS catalog	—
		ZAR1L	Unknown	31178898	GWAS catalog	—
		ZBTB26	Unknown	40465716	GWAS catalog	—
		ZDHHC11B	Unknown	39024449	GWAS catalog	Cytosolic DNA-sensing pathway
		ZNF77	Unknown	30226566	GWAS catalog	Generic Transcription Pathway
CHRONIC KIDNEY DISEASE STAGE 5	C2316810	ALMS1	Unknown	—	Disgenet	Regulation of PLK1 Activity at G2/M Transition Loss of Nlp from mitotic centrosomes Recruitment of mitotic centrosome proteins and complexes +4 more
		COL4A4	Unknown	—	Disgenet	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +20 more
		GATA3	Unknown	—	Disgenet	Th1 and Th2 cell differentiation Th17 cell differentiation Parathyroid hormone synthesis, secretion and action +6 more
		LIPJ	Unknown	—	Disgenet	Formation of the cornified envelope
		PKD1	Unknown	—	Disgenet	VxPx cargo-targeting to cilium
CHRONIC KIDNEY DISEASES	C1561643	ACTN4	Unknown	—	Disgenet	Focal adhesion Adherens junction Tight junction +7 more
		COL4A4	Unknown	—	Disgenet	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +20 more
		PKD1	Unknown	—	Disgenet	VxPx cargo-targeting to cilium
		UMOD	Unknown	—	Disgenet	Asparagine N-linked glycosylation
KIDNEY DISEASE	EFO_0003086	SLC7A9	Unknown	39024449	GWAS catalog	Protein digestion and absorption Basigin interactions Amino acid transport across the plasma membrane +2 more
		TCF7L2	Unknown	39024449	GWAS catalog	Wnt signaling pathway Hippo signaling pathway Adherens junction +26 more
		UMOD	Unknown	39024449	GWAS catalog	Asparagine N-linked glycosylation
KIDNEY DISEASES	C0022658 MESH:D007674	ACTN4	Unknown	—	Disgenet	Focal adhesion Adherens junction Tight junction +7 more
		COL4A4	Unknown	—	Disgenet	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +20 more
		SLC47A1	Unknown	24001450 35710981	CTD, Disgenet	Transport of bile salts and organic acids, metal ions and amine compounds
		SLC7A9	Unknown	21572414	CTD, Disgenet	Protein digestion and absorption Basigin interactions Amino acid transport across the plasma membrane +2 more
		UMOD	Unknown	19430482 8486146	CTD, Disgenet	Asparagine N-linked glycosylation
		VPS33B	Unknown	—	Disgenet	Prevention of phagosomal-lysosomal fusion

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Kidney disease

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