Pathways column key: KEGG Reactome

Disease Term	Disease ID	Gene Symbol	Classification	References	Source	Pathways
CROHN'S DISEASE	EFO_0000384	RFT1	Unknown	28067908 37156999	GWAS catalog	Defective RFT1 causes RFT1-CDG (CDG-1n)
		RFTN2	Unknown	38154582	GWAS catalog	—
		RFX6	Unknown	27569725	GWAS catalog	Maturity onset diabetes of the young
		RGS14	Unknown	23128233 26192919 28067908 37156999	GWAS catalog	Rap1 signaling pathway G alpha (i) signalling events
		RIC8B	Unknown	26974007	GWAS catalog	—
		RIPK2	Unknown	35512355	GWAS catalog	NOD-like receptor signaling pathway Neurotrophin signaling pathway Shigellosis +10 more
		RIT1	Unknown	23128233 26192919	GWAS catalog	—
		RMI2	Unknown	22482804 23128233 26192919 26974007 28067908 37262302	GWAS catalog	Fanconi anemia pathway HDR through Single Strand Annealing (SSA) HDR through Homologous Recombination (HRR) +7 more
		RNASET2	Unknown	21102463 23128233 23850713 26192919 27569725 28067908 37156999 37523193	GWAS catalog	Neutrophil degranulation
		RNF186	Unknown	26974007	GWAS catalog	—
		RNF220	Unknown	35232999	GWAS catalog	Antigen processing: Ubiquitination & Proteasome degradation
		ROPN1L	Unknown	26974007	GWAS catalog	—
		RORA	Unknown	37156999	GWAS catalog	Th17 cell differentiation Circadian rhythm Spinocerebellar ataxia +7 more
		RORC	Unknown	23128233 26192919 26974007 28067908 33608531 37156999	GWAS catalog	Th17 cell differentiation Circadian rhythm Inflammatory bowel disease +2 more
		RPL29	Unknown	37156999	GWAS catalog	Ribosome Coronavirus disease - COVID-19 L13a-mediated translational silencing of Ceruloplasmin expression +7 more
		RPL3	Unknown	21102463 23128233 26192919 26974007 28067908 33686288 37156999	GWAS catalog	Ribosome Coronavirus disease - COVID-19 L13a-mediated translational silencing of Ceruloplasmin expression +7 more
		RPS26	Unknown	37156999	GWAS catalog	Ribosome Coronavirus disease - COVID-19 L13a-mediated translational silencing of Ceruloplasmin expression +10 more
		RPS6KA4	Unknown	23128233 26192919 26974007 28067908	GWAS catalog	MAPK signaling pathway TNF signaling pathway
		RPS6KB1	Unknown	26974007	GWAS catalog	EGFR tyrosine kinase inhibitor resistance Endocrine resistance ErbB signaling pathway +29 more
		RPS9	Unknown	37156999 37523193	GWAS catalog	Ribosome Coronavirus disease - COVID-19 L13a-mediated translational silencing of Ceruloplasmin expression +10 more
		RSBN1	Unknown	23128233 26301688	GWAS catalog	—
		RSPO3	Unknown	23128233 26192919 28067908 37156999	GWAS catalog	Wnt signaling pathway Regulation of FZD by ubiquitination RUNX1 regulates transcription of genes involved in WNT signaling
		RUNX3	Unknown	23266558 26974007 37156999 37523193	GWAS catalog	Th1 and Th2 cell differentiation Epstein-Barr virus infection Binding of TCF/LEF:CTNNB1 to target gene promoters +9 more
		RXRA	Unknown	23665963	GWAS catalog	PPAR signaling pathway Efferocytosis PI3K-Akt signaling pathway +39 more
		SAG	Unknown	37156999	GWAS catalog	Phototransduction Inactivation, recovery and regulation of the phototransduction cascade
		SBK1	Unknown	26301688	GWAS catalog	—
		SBNO2	Unknown	21102463 23128233 26192919 26974007 28067908 37156999	GWAS catalog	—
		SBSPON	Unknown	22412388	GWAS catalog	Defective B3GALTL causes Peters-plus syndrome (PpS) O-glycosylation of TSR domain-containing proteins
		SCAMP3	Unknown	21102463 28067908	GWAS catalog	—
		SCNN1A	Unknown	26192919 28067908	GWAS catalog	Taste transduction Aldosterone-regulated sodium reabsorption Stimuli-sensing channels
		SDF4	Unknown	26974007	GWAS catalog	—
		SDK1	Unknown	30801121	GWAS catalog	SDK interactions
		SEC11C	Unknown	26192919 37156999	GWAS catalog	Protein export Synthesis, secretion, and deacylation of Ghrelin
		SEMA6D	Unknown	28008999	GWAS catalog	Axon guidance Other semaphorin interactions
		SERINC5	Unknown	37156999	GWAS catalog	Viral life cycle - HIV-1 Serine biosynthesis
		SERPINB6	Unknown	32581322	GWAS catalog	Amoebiasis Neutrophil degranulation Dissolution of Fibrin Clot
		SETBP1	Unknown	37156999	GWAS catalog	—
		SETD1A	Unknown	26974007	GWAS catalog	Lysine degradation Metabolic pathways PKMTs methylate histone lysines +1 more
		SH2B1	Unknown	26192919	GWAS catalog	Neurotrophin signaling pathway Prolactin receptor signaling Growth hormone receptor signaling +1 more
		SH2B3	Unknown	26192919 26974007	GWAS catalog	Neurotrophin signaling pathway Regulation of KIT signaling Factors involved in megakaryocyte development and platelet production
		SHC1	Unknown	27569725 37156999 37523193	GWAS catalog	EGFR tyrosine kinase inhibitor resistance Endocrine resistance ErbB signaling pathway +52 more
		SIAH3	Unknown	35232999	GWAS catalog	—
		SKAP1	Unknown	37156999	GWAS catalog	Rap1 signaling pathway
		SKAP2	Unknown	23128233 26192919 26974007 37156999	GWAS catalog	Yersinia infection Signal regulatory protein family interactions
		SLAIN2	Unknown	23128233 26192919	GWAS catalog	—
		SLAMF8	Unknown	28067908 37156999	GWAS catalog	—
		SLC16A11	Unknown	37156999	GWAS catalog	—
		SLC22A23	Unknown	21102463 26192919 37156999	GWAS catalog	—
		SLC22A4	Unknown	26192919	GWAS catalog	Choline metabolism in cancer Organic cation transport
		SLC22A5	Unknown	17554300	GWAS catalog	Choline metabolism in cancer Carnitine metabolism Organic cation transport +1 more
CROHNS DISEASE OF LARGE BOWEL	C0156147	SLC22A5	Unknown	—	Disgenet	Choline metabolism in cancer Carnitine metabolism Organic cation transport +1 more

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Crohn disease

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