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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Irritable bowel syndrome Patellar tendinitis
1 gene
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STK17A(1)
0.007 0.500 1.73e-2 1.90e-2 ✓ sig. Cluster 2 →
Glycinuria with/without oxalate urolithiasis Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A20(2)
0.014 0.250 1.73e-2 1.90e-2 ✓ sig. —
fanconi anemia complementation group l Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FANCL(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
combined immunodeficiency due to moesin deficiency Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MSN(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
cardiomyopathy, dilated, 2k Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. Cluster 311 →
Aplasia cutis-enamel dysplasia syndrome Juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(4)
0.004 1.000 1.73e-2 1.89e-2 ✓ sig. —
Angiokeratoma Intellectual developmental disorder, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
GLA(2)
0.011 0.333 1.72e-2 1.89e-2 ✓ sig. —
Kleine-levin syndrome Microphthalmia
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(6)
0.022 0.143 1.72e-2 1.88e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic brain Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
TRAPPC9(4)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Corticosteroid-binding globulin deficiency Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC38A8(2)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
glycogen storage disease IXc Liver cirrhosis
1 gene
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1 of 1 corroborated by 2+ sources
PHKG2(2)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Liver cirrhosis Mineralocortocoid excess
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B2(7)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Brain calcification Liver cirrhosis
1 gene
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FARSB(1)
0.004 1.000 1.71e-2 1.88e-2 ✓ sig. —
Congenital stromal corneal dystrophy Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DCN(4)
0.007 0.500 1.71e-2 1.87e-2 ✓ sig. —
Endometrial neoplasms Toe syndactyly-telecanthus-anogenital and renal malformations syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAR(2)
0.007 0.500 1.71e-2 1.87e-2 ✓ sig. —
Charcot-marie-tooth disease Congenital cataract facial dysmorphism neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTDP1(6)
0.007 0.500 1.71e-2 1.87e-2 ✓ sig. —
Chromosome y microdeletion syndrome Testicular azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
DDX3Y(2)
0.024 0.125 1.70e-2 1.87e-2 ✓ sig. —
Cancer Essential pentosuria
1 gene
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1 of 1 corroborated by 2+ sources
DCXR(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. Cluster 20 →
Cancer immune dysregulation, autoimmunity, and autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PLCG1(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. —
Cancer immunodeficiency-centromeric instability-facial anomalies syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CDCA7(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. —
Cancer Laryngeal hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
FOXP4(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. —
Cancer thrombocytopenia 2
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD26(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. —
Cancer snijders blok-campeau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.004 1.000 1.70e-2 1.86e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.