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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hepatic methionine adenosyltransferase deficiency Sulfur amino acid metabolism disorder
2 genes
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AHCY(1), GNMT(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 83 →
3mc syndrome Carnevale syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(3), MASP1(4)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 353 →
Acute disseminated encephalomyelitis Benign mucous membrane pemphigoid with ocular involvement
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Bouillaud’s disease
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Benign mucous membrane pemphigoid
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Alpha thalassemia Hemoglobin m disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 72 →
Anastomosing haemangioma Capillary malformation
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(2), GNAQ(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 40 →
Chondrocalcinosis Craniometaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(6), OTULIN(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 208 →
Chromosome 3p25 monosomy Rippling muscle disease
2 genes
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2 of 2 corroborated by 2+ sources
OXTR(2), CAV3(6)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 217 →
Blepharophimosis syndrome Blepharophimosis-intellectual disability syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KAT6B(3), MED12(5)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 200 →
Bouillaud’s disease Skeletal system disease
2 genes
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2 of 2 corroborated by 2+ sources
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Bouillaud’s disease Wheat allergic reaction
2 genes
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2 of 2 corroborated by 2+ sources
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Capillary malformation Congenital lipomatous overgrowth, vascular malformations, and epidermal nevi
2 genes
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1 of 2 corroborated by 2+ sources
GNA11(1), PIK3CA(3)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 40 →
Carnevale syndrome Malpuech facial clefting syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 353 →
S-adenosylhomocysteine hydrolase deficiency Sulfur amino acid metabolism disorder
2 genes
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1 of 2 corroborated by 2+ sources
AHCY(2), GNMT(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 83 →
Skeletal system disease Wheat allergic reaction
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Keratitis-ichthyosis-deafness syndrome X-linked hearing loss with perilymphatic gusher
2 genes
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2 of 2 corroborated by 2+ sources
GJB6(2), GJB2(4)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 210 →
Lacrimoauriculodentodigital syndrome Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(5), FGFR2(6)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Ladd syndrome Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(4), FGFR2(6)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Episodic pain syndrome Erythromelalgia
2 genes
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2 of 2 corroborated by 2+ sources
SCN10A(5), SCN11A(4)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 164 →
Congenital palmoplantar and perioral keratoderma of olmsted Olmsted syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PERP(4), TRPV3(5)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Coronal craniosynostosis Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), TWIST1(6)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Craniofacial dysostosis Lacrimoauriculodentodigital syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(5), FGFR2(4)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Craniofacial dysostosis Ladd syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(3), FGFR2(5)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —
Craniofacial dysostosis Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), FGFR2(6)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.