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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Borderline personality disorder Mood disorder
1 gene
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TPH1(1)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
chondrodysplasia with joint dislocations, gpapp type Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
BPNT2(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Choreoacanthocytosis Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
ciliary dyskinesia, primary, 45 Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
TTC12(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Mood disorder thrombocytopenia 3
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Mood disorder xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Autoimmune nervous system disorder Common variable immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
EOMES(3)
0.013 0.250 1.93e-2 2.11e-2 ✓ sig. —
Brain abnormalities neurodegeneration dysosteosclerosis Diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(5)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus leukoencephalopathy, diffuse hereditary, with spheroids 1
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus mehmo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2S3(3)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. Cluster 73 →
Diabetes mellitus Early-onset calcifying leukoencephalopathy-skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(3)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Estrogen-receptor negative breast cancer Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Estrogen-receptor negative breast cancer snijders blok-campeau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Diabetes mellitus immune dysregulation, autoimmunity, and autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PLCG1(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
ciliary dyskinesia, primary, 49, without situs inversus Estrogen-receptor negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
CFAP74(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Estrogen-receptor negative breast cancer glycosylphosphatidylinositol biosynthesis defect 17
1 gene
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1 of 1 corroborated by 2+ sources
PIGH(2)
0.003 1.000 1.92e-2 2.10e-2 ✓ sig. —
Colorectal neoplasms extraoral halitosis due to methanethiol oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. Cluster 5 →
Blepharophimosis-ptosis-epicanthus inversus syndrome Colorectal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(6)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Parenti-mignot neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD5(5)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms PGM1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
PGM1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Chronic infantile diarrhea due to guanylate cyclase 2c overactivity Colorectal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(3)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Dna replication fork stabilization factor donson-related microcephaly, short stature, limb abnormalities spectrum
1 gene
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1 of 1 corroborated by 2+ sources
DONSON(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms DPAGT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Duodenal atresia
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(2)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —
Colorectal neoplasms Enteropathy
1 gene
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1 of 1 corroborated by 2+ sources
SLCO2A1(3)
0.003 1.000 1.89e-2 2.06e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.