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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoimmune polyendocrine syndrome Hemoglobinuria paroxysmal
2 genes
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0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
ATAD3A(4), TSEN54(7), SEPSECS(5), RARS2(6)
0.063 0.129 7.57e-7 4.54e-6 ✓ sig. —
Myeloproliferative disorder Small vessel stroke
5 genes
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SH2B3(1), ATXN2(1), STN1(1), PMF1(1), PMF1-BGLAP(1)
0.051 0.100 7.50e-7 4.51e-6 ✓ sig. —
Peripheral vascular disease Venous insufficiency
3 genes
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ABO(1), SLC19A2(1), F5(1)
0.075 0.333 7.47e-7 4.49e-6 ✓ sig. —
Lipoma Meningioma
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), TERT(2), BAP1(2)
0.088 0.250 7.25e-7 4.36e-6 ✓ sig. —
Blood coagulation disorder Lipoma
3 genes
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1 of 3 corroborated by 2+ sources
SLC19A2(1), F5(3), NME7(1)
0.088 0.250 7.25e-7 4.36e-6 ✓ sig. —
Immunodeficiency Interferon gamma receptor deficiency
3 genes
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2 of 3 corroborated by 2+ sources
IFNGR2(5), IFNGR1(5), TMEM50B(1)
0.021 1.000 7.20e-7 4.33e-6 ✓ sig. Cluster 10 →
Erythematosquamous dermatosis Oculocutaneous albinism
3 genes
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3 of 3 corroborated by 2+ sources
TYR(6), MC1R(5), SLC45A2(6)
0.091 0.231 7.17e-7 4.32e-6 ✓ sig. —
Gastritis Optic neuritis
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DRB1(1), GSTM1(1), HLA-DQB1(2)
0.091 0.231 7.17e-7 4.32e-6 ✓ sig. Cluster 1 →
Ruptured abdominal aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Shprintzen-goldberg syndrome Thoracoabdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Bile duct cancer Liver cancer
2 genes
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MAPK1(1), YPEL1(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
C3 glomerulonephritis Thrombotic microangiopathy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(3), CFH(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Atypical hemolytic uremic syndrome C3 glomerulonephritis
2 genes
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2 of 2 corroborated by 2+ sources
CFI(3), CFH(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Calcium metabolism disorders Chondrocalcinosis
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(5), OTULIN(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 208 →
Calcium metabolism disorders Craniometaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(6), OTULIN(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 208 →
Capillary malformation Capillary malformation-arteriovenous malformation
2 genes
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2 of 2 corroborated by 2+ sources
GNAQ(3), PIK3CA(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 40 →
Capillary malformation-arteriovenous malformation Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(7), CCNH(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 40 →
Adult myoclonic epilepsy Benign adult familial myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 357 →
Aicardi goutieres syndrome Chilblain lupus
2 genes
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2 of 2 corroborated by 2+ sources
SAMHD1(4), TREX1(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 150 →
Angiokeratoma Cavernous malformations of cns
2 genes
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ANKIB1(1), KRIT1(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 308 →
Double outlet right ventricle Right atrial isomerism
2 genes
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1 of 2 corroborated by 2+ sources
CERS1(1), GDF1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 113 →
Early onset vitamin b6 dependent epilepsy Pyridoxine dependent epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ALDH7A1(4), PLPBP(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.