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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Middle aortic syndrome Watson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NF1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
Alport syndrome Midface hypoplasia-hearing impairment-elliptocytosis-nephrocalcinosis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AMMECR1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 49 →
Mild cognitive impairment SLC6A3-related dopamine transporter deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 392 →
mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive Sengers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 412 →
mucopolysaccharidosis type 3A Sanfilippo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SGSH(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 134 →
mucopolysaccharidosis type 3B Sanfilippo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAGLU(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 134 →
mucopolysaccharidosis type 3C Sanfilippo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 134 →
mucopolysaccharidosis type 3D Sanfilippo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GNS(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 134 →
Multifocal osteomyelitis Sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 216 →
Dysgenesis of corpus callosum multiple congenital anomalies-neurodevelopmental syndrome, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
OTUD5(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 62 →
Multiple synostoses syndrome Proximal symphalangism
1 gene
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1 of 1 corroborated by 2+ sources
NOG(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Multiple synostoses syndrome NOG-related symphalangism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOG(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital myotonia Smith-lemli-opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CLCN1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital pain insensitivity Congenital sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NGF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Congenital secretory diarrhea Duodenal atresia
1 gene
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GUCY2C(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 172 →
Congenital sensory neuropathy Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
NGF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Corneal edema pitt-hopkins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 222 →
Coronary medial sclerosis of infancy Crystal arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →
Cortical dysgenesis with pontocerebellar hypoplasia Tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cortical dysplasia lethal osteosclerotic bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FAM20C(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 275 →
Cramp-fasciculation syndrome Genetic peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Cramp-fasciculation syndrome Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Craniofrontonasal dysplasia X-linked intellectual disability-cerebellar hypoplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OPHN1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 117 →
Cryopyrin-associated periodic syndrome Infantile neurological cutaneous and articular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 192 →
Crystal arthropathy hypopigmentation-punctate palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.