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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dyskinesia Dyskinesia, drug-induced
2 genes
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2 of 2 corroborated by 2+ sources
PDYN(2), DRD2(2)
0.050 0.133 2.84e-4 7.11e-4 ✓ sig. —
Spondylosis Vertebral column disorder
2 genes
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SOX5(1), HLA-B(1)
0.048 0.154 2.82e-4 7.07e-4 ✓ sig. —
Patent ductus arteriosus Uranostaphyloschisis
2 genes
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FLNA(1), INPP5E(1)
0.051 0.125 2.76e-4 6.90e-4 ✓ sig. —
Auditory system disease Benign prostatic hyperplasia
2 genes
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BMAL1(1), RASSF10(1)
0.044 0.182 2.73e-4 6.83e-4 ✓ sig. —
Congenital adrenal hyperplasia Ovarian cysts
2 genes
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1 of 2 corroborated by 2+ sources
CYP17A1(3), MSH2(1)
0.044 0.182 2.73e-4 6.83e-4 ✓ sig. —
Hoarding disorder Pericarditis
2 genes
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LRRC3B(1), NEK10(1)
0.053 0.105 2.70e-4 6.78e-4 ✓ sig. Cluster 278 →
Charcot-marie-tooth disease Spinocerebellar ataxia
6 genes
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6 of 6 corroborated by 2+ sources
MME(8), SETX(6), PLD3(5), IFRD1(3), POLG(2), PRX(8)
0.026 0.058 2.70e-4 6.77e-4 ✓ sig. —
Choroidal dystrophy Retinitis pigmentosa, digenic
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 45 →
Choroidal sclerosis Retinitis pigmentosa, digenic
1 gene
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PRPH2(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 45 →
Rhabdoid tumor Rhabdoid tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(7)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 120 →
Rhabdoid tumor predisposition syndrome Thoracic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(6)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 120 →
Craniometadiaphyseal dysplasia Schwartz-lelek syndrome
1 gene
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ANKH(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 208 →
Sclerosteosis Van buchem disease
1 gene
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1 of 1 corroborated by 2+ sources
SOST(7)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Seborrhea-like dermatitis with psoriasiform elements Thiel-behnke corneal dystrophy
1 gene
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TBCD(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Pelger-huet anomaly Specific granule deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CEBPE(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Teebi syndrome Tessier facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
SPECC1L(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 203 →
Ameloblastoma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic astrocytoma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Craniopharyngioma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Mitral valve disease Uterine disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Camurati-engelmann syndrome Van buchem disease
1 gene
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LRP5(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Craniopharyngioma Vascular calcification
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 104 →
Congenital scoliosis Verloes-bourguignon syndrome
1 gene
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LTBP3(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 52 →
Senter syndrome Vohwinkel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
15q24 microdeletion Witteveen-kolk syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 343 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.