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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Intellectual developmental disorder expressive speech dysmorphic Intellectual developmental disorder speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 271 →
Intellectual developmental disorder language autism Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
FOXP1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 324 →
Intellectual developmental disorder speech dysmorphic Schinzel-Giedion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 271 →
Intellectual disability and myopathy syndrome Kleefstra syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCC9(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 234 →
Intermittent explosive disorder Paroxysmal dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Intervertebral disc displacement spondyloepiphyseal dysplasia with congenital joint dislocations
1 gene
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1 of 1 corroborated by 2+ sources
CHST3(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Intestinal aganglionosis Kleins syndrome
1 gene
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EDNRB(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cardiac tamponade Intracranial thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Chromosome 17q23.1-q23.2 deletion syndrome Intraductal noninfiltrating carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 124 →
GLUT1 deficiency syndrome Intraductal noninfiltrating carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 124 →
Epilepsy with myoclonic absence Intraductal noninfiltrating carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 124 →
Growth hormone-secreting pituitary adenoma Isolated somatotropin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 82 →
KCND2-related neurodevelopmental disorder with or without seizures Myoclonic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
KCND2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Kleins syndrome Waardenburg syndrome type 4A
1 gene
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1 of 1 corroborated by 2+ sources
EDNRB(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Lactic acidosis Ptosis
1 gene
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PMPCA(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 133 →
Cohen-gibson syndrome Weaver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EED(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
Colchicine resistance Hematologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cole disease Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →
combined immunodeficiency due to MALT1 deficiency Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 324 →
combined immunodeficiency due to STIM1 deficiency Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 217 →
Cataract-corneal dystrophy syndrome Commissural facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Commissural facial cleft PAX6-related ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Conductive hearing loss kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Conductive hearing loss Congenital idiopathic intestinal pseudoobstruction
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 62 →
Conductive hearing loss Otopalatodigital spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 62 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.