Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cafe-au-lait spots LZTR1-related schwannomatosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital malformation syndromes associated with short stature LZTR1-related schwannomatosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Autosomal dominant sensorineural deafness macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss
1 gene
Show details
1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
46,xx ovotesticular disorder of sex development MCM9-related gametogenic failure
1 gene
Show details
1 of 1 corroborated by 2+ sources
MCM9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 38 →
microcephaly with lissencephaly and/or hydranencephaly Visceral neuropathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NDE1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 220 →
Microhydranencephaly Visceral neuropathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NDE1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 220 →
Hydrophthalmos Microspherophakia
1 gene
Show details
1 of 1 corroborated by 2+ sources
LTBP2(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Aortic arch syndrome Middle ear cholesteatoma
1 gene
Show details
IL2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
mitochondrial trifunctional protein deficiency Rickets
1 gene
Show details
1 of 1 corroborated by 2+ sources
HADHB(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Monomelic amyotrophy Neuralgic amyotrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SEPTIN9(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
MORM syndrome Penile disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
INPP5E(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Mucoepidermoid carcinoma Tumor predisposition syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
BAP1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 389 →
Cold paroxysmal hemoglobinuria multiple congenital anomalies-hypotonia-seizures syndrome 3
1 gene
Show details
1 of 1 corroborated by 2+ sources
PIGT(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hemoglobinuria paroxysmal multiple congenital anomalies-hypotonia-seizures syndrome 3
1 gene
Show details
1 of 1 corroborated by 2+ sources
PIGT(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
multiple congenital anomalies-hypotonia-seizures syndrome 3 Paroxysmal nocturnal hemoglobinuria
1 gene
Show details
1 of 1 corroborated by 2+ sources
PIGT(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
multiple endocrine neoplasia type 4 Pituitary neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
CDKN1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 82 →
Bilateral vestibulopathy Hereditary sensory and motor neuropathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
RFC1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 190 →
Bile duct disorder PRKAG2-related cardiomyopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRKAG2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 318 →
Blomstrand lethal chondrodysplasia Rickets
1 gene
Show details
1 of 1 corroborated by 2+ sources
PTH1R(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Bothnia retinal dystrophy Retinitis punctata albescens
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Brachial plexus neuritis Monomelic amyotrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SEPTIN9(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Brain-lung-thyroid syndrome Choreoathetosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
NKX2-1(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Branchial arch abnormalities syndrome Vein of galen aneurysm
1 gene
Show details
1 of 1 corroborated by 2+ sources
KMT2D(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 144 →
Branchial cleft anomalies Vein of galen aneurysm
1 gene
Show details
KMT2D(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 144 →
BRCA1-related cancer predisposition Breast implant-associated anaplastic large cell lymphoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
BRCA1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.