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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hypereosinophilic syndrome Osteoglophonic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Hartsfield-Bixler-Demyer syndrome Hypereosinophilic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Congenital hyperinsulinism hyperinsulinemic hypoglycemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
ABCC8(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital hyperinsulinism hyperinsulinemic hypoglycemia, familial, 2
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ11(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital hyperinsulinism hyperinsulinism due to glucokinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GCK(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital hyperinsulinism Hyperinsulinism-hyperammonemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 36 →
Eye pain Hypocalcemia
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypocalcemia Rhabdomyoma
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypomyelinating leukodystrophy 2 Pelizaeus-merzbacher disease
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypomyelinating leukodystrophy 3 Pelizaeus-merzbacher disease
1 gene
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1 of 1 corroborated by 2+ sources
AIMP1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hypoplasminogenemia Laryngeal disease
1 gene
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1 of 1 corroborated by 2+ sources
PLG(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 155 →
Idiopathic diabetes Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Idiopathic diabetes Interleukin 2 receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Idiopathic diabetes immunodeficiency due to CD25 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
PRPH2-related retinopathy Retinitis punctata albescens
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 45 →
Retinoblastoma Woolly hair
1 gene
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1 of 1 corroborated by 2+ sources
RB1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism Rhizomelic skeletal dysplasia with or without pelger-huet anomaly
1 gene
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1 of 1 corroborated by 2+ sources
LBR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 280 →
Retinitis punctata albescens RHO-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RHO(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Right bundle branch block Right ventricular hypertrophy
1 gene
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BMPR2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 339 →
Right cardiac ventricular dilatation Right ventricular hypertrophy
1 gene
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BMPR2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 339 →
Palmoplantar keratoderma with congenital alopecia Right ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Retinitis punctata albescens RLBP1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RLBP1(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Rod-cone dystrophy, sensorineural deafness, and fanconi-type renal dysfunction Visceral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
RRM2B(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Benign infantile epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Embryonal nuclear cataract Sertoli-leydig cell tumor of ovary
1 gene
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DICER1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.