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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Malunion fracture Smooth surface dental caries
2 genes
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PSD3(1), SH2D4A(1)
0.042 0.154 4.08e-4 9.07e-4 ✓ sig. Cluster 287 →
Aortic valve disease Major salivary gland carcinoma
2 genes
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MYMK(1), SLC2A6(1)
0.023 0.333 4.04e-4 8.99e-4 ✓ sig. —
Moyamoya angiopathy Moyamoya disease
3 genes
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3 of 3 corroborated by 2+ sources
NF1(2), RNF213(6), BRCC3(3)
0.031 0.083 4.04e-4 8.98e-4 ✓ sig. Cluster 77 →
Hypospadias Prostatic intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
ESR2(2), AR(4)
0.038 0.182 3.93e-4 8.75e-4 ✓ sig. —
Craniometaphyseal dysplasia Hallermanns syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Haploinsufficiency Mycosis fungoides
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Haploinsufficiency Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
KCNH2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Aphasia Hematoma
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hemiparkinsonism Parkinsonian-pyramidal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNCA(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 256 →
Hemiparkinsonism Thyroid hemiagenesis
1 gene
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VPS13C(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 256 →
Hemolytic disease of fetus and newborn Rh deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RHD(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 302 →
Hemorrhagic stroke Hepatic fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
PDGFA(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hennekam syndrome Van maldergem syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAT4(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Horizontal gaze palsy with progressive scoliosis Partial agenesis of corpus callosum
1 gene
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DCC(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Acrocallosal syndrome Hydrolethalus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KIF7(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 142 →
Hyperkalemia Malignant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hyperoxia Intermittent hydrarthrosis
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hypobetalipoproteinemia Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
APOB(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 140 →
Congenital hemangioma Hypocalciuric hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Renal cysts and diabetes syndrome Renal hypoplasia
1 gene
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PAX2(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Renovascular hypertension Resistant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Rh deficiency syndrome Rh isoimmunization
1 gene
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1 of 1 corroborated by 2+ sources
RHD(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 302 →
Rhabdoid tumor Schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 120 →
Rhabdoid tumor predisposition syndrome Schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(7)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 120 →
Congenital hemangioma Schwartz-jampel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.