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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetes mellitus ketosis prone immunodeficiency due to CD25 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hyper-igm immunodeficiency syndrome immunodeficiency, common variable, 2
1 gene
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1 of 1 corroborated by 2+ sources
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 131 →
Diabetes mellitus ketosis prone Interleukin 2 receptor deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IL2RA(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
hereditary pheochromocytoma-paraganglioma Intestinal cancer
1 gene
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SDHD(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 81 →
Cardiac tamponade Intracranial vasospasm
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Intrauterine growth restriction-short stature-early adult-onset diabetes syndrome Russell-silver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKN1C(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 199 →
Iodide peroxidase deficiency Thyroid dyshormonogenesis
1 gene
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1 of 1 corroborated by 2+ sources
TPO(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 88 →
Bonnevie-ullrich syndrome Isolated somatotropin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hereditary hemorrhagic telangiectasia juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Keratosis linearis-ichthyosis congenita-sclerosing keratoderma syndrome Proteasome associated autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POMP(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
keutel syndrome Varicose veins
1 gene
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1 of 1 corroborated by 2+ sources
MGP(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Kleine-levin syndrome NAA10-related syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAA10(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital omphalocele LAMA5-related multisystemic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LAMA5(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Leiomyosarcoma PTEN hamartoma tumor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Testicular neoplasms xeroderma pigmentosum group F
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
46,xy sex reversal Testicular regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DHX37(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 38 →
Pemphigus vulgaris Thiopurine immunosuppressant-induced pancreatitis
1 gene
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0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 1 →
Interrupted aortic arch Thyroid agenesis
1 gene
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NKX2-5(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
tooth agenesis, selective, 1 Wolf-hirschhorn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 159 →
Tooth and nail syndrome Wolf-hirschhorn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 159 →
Torsion dystonia Whispering dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Astigmatism Trichiasis
1 gene
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MCM7(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Carney complex Trismus-pseudocamptodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH8(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Torsion dystonia TUBB4A-related neurologic disorder
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Branchiootorenal syndrome Usher syndrome type 3
1 gene
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1 of 1 corroborated by 2+ sources
CLRN1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 145 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.