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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Polynesian bronchiectasis primary ciliary dyskinesia 2
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Polynesian bronchiectasis primary ciliary dyskinesia 21
1 gene
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1 of 1 corroborated by 2+ sources
DRC1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Polynesian bronchiectasis primary ciliary dyskinesia 25
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Polynesian bronchiectasis primary ciliary dyskinesia 7
1 gene
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1 of 1 corroborated by 2+ sources
DNAH11(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Progressive myoclonic epilepsy with renal failure progressive myoclonus epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 329 →
Disseminated intravascular coagulation Prostatic disease
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Autoimmune pulmonary alveolar proteinosis Pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Heerfordt syndrome Pulmonary alveolar proteinosis
1 gene
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0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
radioulnar synostosis with amegakaryocytic thrombocytopenia 1 Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
HOXA11(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Exudative vitreoretinopathy RCBTB1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RCBTB1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 288 →
16p13.2 microdeletion syndrome Diabetic maculopathy
1 gene
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1 of 1 corroborated by 2+ sources
USP7(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
22q11.2 deletion syndrome Intermittent explosive disorder
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
22q11.2 deletion syndrome Chromosome 22q11.2 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
22q11.2 deletion syndrome Conotruncal anomaly face syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
8q24.3 microdeletion syndrome Charge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 224 →
Aarskog-scott syndrome, x-linked Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
FGD1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Acral self-healing collodion baby Congenital ichthyosiform erythroderma
1 gene
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1 of 1 corroborated by 2+ sources
TGM1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 233 →
Acrokeratosis verruciformis Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
amyotrophic lateral sclerosis type 19 Peritoneal disease
1 gene
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1 of 1 corroborated by 2+ sources
ERBB4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Aplasia and myelodysplasia Bone marrow failure syndromes
1 gene
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1 of 1 corroborated by 2+ sources
SRP72(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Haddad syndrome Tetrahydrobiopterin-responsive phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome Tetrahydrobiopterin-responsive phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Thiamine-responsive megaloblastic anemia Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 37 →
Disseminated intravascular coagulation Thrombomodulin-related bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
THBD(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 55 →
Disseminated intravascular coagulation thrombophilia due to thrombin defect
1 gene
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1 of 1 corroborated by 2+ sources
F2(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.