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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Choroidal dystrophy Choroideremia
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 45 →
Choroidal sclerosis Choroideremia
1 gene
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PRPH2(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 45 →
Colobomatous optic disc macular atrophy chorioretinopathy syndrome Retinoschisis
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Colonic polyps Immune system disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 255 →
Cone-rod synaptic disorder Ocular albinism
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 84 →
Congenital diarrhea Congenital epithelial dysplasia of intestine
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Congenital hereditary endothelial dystrophy Polymorphous corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
OVOL2(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 75 →
Congenital hereditary endothelial dystrophy Posterior polymorphous corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
OVOL2(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 75 →
Congenital isolated growth hormone deficiency Growth hormone-secreting pituitary adenoma
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 82 →
Congenital mesoblastic nephroma Thrombocytopenia with normal platelets
1 gene
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1 of 1 corroborated by 2+ sources
ETV6(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Congenital mesoblastic nephroma Hematologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ETV6(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Autoimmune hemolytic anemia Haploinsufficiency
1 gene
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CTLA4(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Familial mediterranean fever Hematologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hemiplegia Paroxysmal ventricular fibrillation
1 gene
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1 of 1 corroborated by 2+ sources
DPP6(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Benign neonatal-infantile seizures Hemiplegia
1 gene
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1 of 1 corroborated by 2+ sources
SCN2A(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 165 →
Hemiplegia Woodhouse sakati syndrome
1 gene
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1 of 1 corroborated by 2+ sources
METTL8(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 165 →
Ectopic rhythm Hereditary ataxia
1 gene
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1 of 1 corroborated by 2+ sources
KCND3(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hereditary hyperekplexia Retinitis pigmentosa, juvenile cataract, short stature, intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 379 →
Dilatation of pulmonary artery Hyperandrogenism
1 gene
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1 of 1 corroborated by 2+ sources
BMPR2(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hyperekplexia Retinitis pigmentosa, juvenile cataract, short stature, intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 379 →
dyskeratosis congenita, autosomal dominant 2 Head and neck cancer
1 gene
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1 of 1 corroborated by 2+ sources
TERT(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Angiofollicular ganglionic hyperplasia Headache
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Angiolymphoid hyperplasia Headache
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Castleman disease Headache
1 gene
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IL6(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Deafness, x-linked hearing loss, X-linked 6
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.