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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mosaic variegated aneuploidy mosaic variegated aneuploidy syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
BUB1B(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hypertrichosis mucopolysaccharidosis type 3B
1 gene
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1 of 1 corroborated by 2+ sources
NAGLU(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
multiple endocrine neoplasia type 4 Prostatic intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
CDKN1B(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Autoimmune lymphoproliferative disorder multisystemic smooth muscle dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 18 →
Copper overload cirrhosis multisystemic smooth muscle dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Central precocious puberty Craniofacial deafness hand syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 229 →
Central serous retinopathy Intellectual developmental disorder seizures cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
RORA(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 107 →
Central serous retinopathy Factor h deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 107 →
Central serous retinopathy Genetic hemolytic uremic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 107 →
Central serous retinopathy neuropathy, hereditary sensory and autonomic, type 2A
1 gene
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1 of 1 corroborated by 2+ sources
WNK1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cerebellar ataxia with deafness and narcolepsy Deglutition disorder
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(5)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cerebellar ataxia, deafness, and narcolepsy Deglutition disorder
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2N Trichothiodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AARS1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 1A Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Childhood apraxia of speech Silver-russell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 199 →
Arthrogryposis childhood-onset nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TNNI1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 202 →
Chromosome 16p13.3 deletion syndrome Hypertrichosis
1 gene
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CREBBP(1)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 3
1 gene
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1 of 1 corroborated by 2+ sources
DNAH5(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ataxia Duchenne muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
DMD(5), SNCA(2)
0.041 0.095 7.03e-4 1.34e-3 ✓ sig. —
Bell's palsy Diffuse idiopathic skeletal hyperostosis
2 genes
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CDC5L(1), SUPT3H(1)
0.030 0.182 7.00e-4 1.34e-3 ✓ sig. —
Retinopathy of prematurity Spondylosis
2 genes
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1 of 2 corroborated by 2+ sources
PTPRD(1), HLA-B(2)
0.041 0.100 6.82e-4 1.30e-3 ✓ sig. —
Generalized anxiety disorder Renal agenesis
2 genes
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2 of 2 corroborated by 2+ sources
BLTP1(2), FRAS1(2)
0.037 0.133 6.76e-4 1.29e-3 ✓ sig. —
Cardiac embolism Periprosthetic osteolysis
2 genes
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GLIS3(1), RGS5(1)
0.033 0.167 6.68e-4 1.28e-3 ✓ sig. —
Birdshot chorioretinopathy Parapsoriasis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Blepharitis Respiratory system neoplasm
1 gene
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MC1R(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.