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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Vitamin b deficiency Vitamin b12-unresponsive methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
Rothmund-thomson syndrome Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked dominant hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked hypophosphatemia
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets X-linked nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Intestinal neoplasms xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 104 →
Xeroderma pigmentosum xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Xeroderma pigmentosum xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(8)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group F
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital pes cavus xeroderma pigmentosum group G
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Xeroderma pigmentosum xeroderma pigmentosum group G
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum variant type
1 gene
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1 of 1 corroborated by 2+ sources
POLH(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Congenital muscular hypertrophy-cerebral syndrome Congenital pes cavus
1 gene
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1 of 1 corroborated by 2+ sources
SMC1A(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 10 Fetal akinesia deformation sequence
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 10 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 17 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP4(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 2A Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 2C Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 8 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGRN(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 9 Fetal akinesia deformation sequence
1 gene
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1 of 1 corroborated by 2+ sources
MUSK(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 9 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MUSK(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.