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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Acid-base disorder Laryngeal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Acroosteolysis Hypereosinophilic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Anal polyp Dihydropyrimidine metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 349 →
Anaptoglobinemia Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
HP(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Aortic valve stenosis Major salivary gland carcinoma
1 gene
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HACE1(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Cardiac valvular dysplasia Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
MTHFD1(5)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital generalized lipodystrophy Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
BSCL2(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital hearing disorder Intellectual disability, autism, speech apraxia, craniofacial dysmorphism syndrome
1 gene
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COL4A3(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital hearing disorder Jervell and lange-nielsen syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNE1(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital isolated growth hormone deficiency Pituitary neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 82 →
Congenital keratoglobus Hydrophthalmos
1 gene
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LTBP2(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital leukocyte adherence deficiency Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
ITGB2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Congenital mesoblastic nephroma Hypereosinophilic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ETV6(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Hepatic adenoma Idiopathic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Intellectual disability with craniofacial anomalies and cardiac defects Vein of galen aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Collagen vi-related myopathy Intellectual disability, autism, speech apraxia, craniofacial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A3(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 49 →
Intestinal vascular insufficiency Paralytic strabismus
1 gene
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NEDD9(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Autoimmune pancreatitis Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Intrahepatic bile duct cancer Tongue cancer
1 gene
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0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Laryngeal neoplasms Wernicke-korsakoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Idiopathic generalized epilepsy sick sinus syndrome 2, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
HCN4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
immunodeficiency 114, folate-responsive Megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A1(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
immunodeficiency 60 Latent autoimmune diabetes in adults
1 gene
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1 of 1 corroborated by 2+ sources
BACH2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Hyperoxaluria immunodeficiency, common variable, 12
1 gene
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1 of 1 corroborated by 2+ sources
NFKB1(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital nonspherocytic hemolytic anemia inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.