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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital microvillous atrophy Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
FAS-related autoimmune lymphoproliferative immune disorder Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAS(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hyper-ige syndrome Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Lymphoproliferative syndrome lymphoproliferative syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
ITK(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Lymphoproliferative syndrome lymphoproliferative syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CD27(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypothyroidism macrothrombocytopenia, isolated, 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Malabsorption syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
MECOM-associated syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
Congenital hydrocephalus medium chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADM(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
16q24.3 microdeletion syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
kbg syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hypophosphatasia Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anophthalmia microphthalmia, syndromic 12
1 gene
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1 of 1 corroborated by 2+ sources
RARB(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Miles-carpenter syndrome Partington syndrome
1 gene
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ZC4H2(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Diabetic cardiomyopathy mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Mowat-wilson syndrome Papillary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
ZEB2(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Endocrine system disease multiple congenital anomalies-hypotonia-seizures syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
PIGN(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 153 →
multisystemic smooth muscle dysfunction syndrome Nephrosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Spondylometaphyseal dysplasia TRIP11-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TRIP11(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Oguchi disease TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 151 →
Nephrosclerosis Vascular ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 334 →
Anophthalmia Waardenburg anophthalmia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMOC1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Stickler syndrome Wagner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCAN(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 248 →
Partington syndrome Wieacker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Partington syndrome Wieacker-wolff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.