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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
progressive pseudorheumatoid arthropathy of childhood Pulmonary edema
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia Proximal renal tubular acidosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A4(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia pycnodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Pyoderma gangrenosum Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital anomaly of limb radioulnar synostosis with amegakaryocytic thrombocytopenia 1
1 gene
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1 of 1 corroborated by 2+ sources
HOXA11(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
CDKL5 disorder Rett syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKL5(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 61 →
Cerebrovascular trauma Coronary stenosis
1 gene
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1 of 1 corroborated by 2+ sources
PHACTR1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2A1 Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
KIF1B(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Childhood-onset benign chorea with striatal involvement Thyroiditis
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Choroidal neovascularization Gliosarcoma
1 gene
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VEGFA(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Chromosome 22q11.2 deletion syndrome Loeys-dietz syndrome
1 gene
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ABCA3(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
ciliary dyskinesia, primary, 39 Congenital fibrosis of extraocular muscles
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Coats disease Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Cocoon syndrome Congenital anomaly of limb
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Codas syndrome Mitochondrial encephalomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
LONP1(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 50 →
congenital muscular dystrophy with intellectual disability and severe epilepsy Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
DPM2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 21 →
Congenital muscular hypertrophy-cerebral syndrome Rett syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMC1A(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
congenital myasthenic syndrome 10 Rett syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
congenital myopathy with myasthenic-like onset Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
PAX7(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital retinal aneurysm Rett syndrome
1 gene
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RS1(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital retinal anomaly Rett syndrome
1 gene
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RS1(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Congenital sclerocornea Congenital total cataract
1 gene
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GJA8(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Contractures, pterygia, and spondylocarpotarsal fusion syndrome Distal arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
MYH3(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Contractures, pterygia, and variable skeletal fusions syndrome Distal arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
MYH3(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Coronary stenosis Urinary retention
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.