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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
IMPDH1-related retinopathy Thyroiditis
1 gene
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1 of 1 corroborated by 2+ sources
IMPDH1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 1 →
Intellectual developmental disorder seizures cerebellar Seasonal affective disorder
1 gene
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1 of 1 corroborated by 2+ sources
RORA(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia Intellectual developmental disorder with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Intermittent explosive disorder Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
interstitial lung disease due to ABCA3 deficiency Loeys-dietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
legius syndrome Male infertility spermatogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
SPRED1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
DDC(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 81 →
Arthrogryposis with oculomotor limitation and retinal anomalies Distal arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Arthrogryposis with oculomotor limitation and retinal anomalies Pulmonary edema
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Atrophia bulborum heritaria Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Atypical absence epilepsy Seasonal affective disorder
1 gene
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NPY(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune neurological syndrome Axonal hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 207 →
Autoimmune neurological syndrome multiple symmetric lipomatosis with partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 207 →
Autoimmune neurological syndrome Charcot-Marie-Tooth disease type 2A2
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 207 →
Autoimmune neurological syndrome Delta-sarcoglycan-related limb-girdle muscular dystrophy r6
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune neurological syndrome dilated cardiomyopathy 1L
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Behavior disorders Seasonal affective disorder
1 gene
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SLC6A4(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Benign mesial temporal lobe epilepsy Generalized epilepsy with febrile seizures plus
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Dental enamel hypoplasia loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Loeys-dietz syndrome loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 12 →
lymphatic malformation 1 Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema Lymphedema-distichiasis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Lymphedema Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Male infertility motility disorder Male infertility spermatogenesis disorder
1 gene
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CCDC146(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast neoplasms meier-gorlin syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
CDT1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.