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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Breast cyst Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1D(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast neoplasms Coloboma, cleft lip-palate and mental retardation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
YAP1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 401 →
Breast neoplasms Uveal coloboma-cleft lip and palate-intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
YAP1(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 401 →
Autoimmune uveitis Breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CXCL8(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Breast neoplasms melanoma, cutaneous malignant, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
CDK4(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Brunner syndrome Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Bullous pyoderma gangrenosum Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Cardiac-urogenital syndrome Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Congenital total cataract
1 gene
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LSS(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Loeys-dietz syndrome Rienhoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGFB3(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Patent ductus arteriosus Right ventricle hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Loeys-dietz syndrome Rupture, spontaneous
1 gene
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1 of 1 corroborated by 2+ sources
COL5A1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Seasonal affective disorder Separation anxiety disorder
1 gene
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DRD4(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Primary aldosteronism sinoatrial node dysfunction and deafness
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1D(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Loeys-dietz syndrome SMAD6-related disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Male infertility spermatogenesis disorder spermatogenic failure 38
1 gene
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1 of 1 corroborated by 2+ sources
ARMC2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 31 →
Male infertility spermatogenesis disorder spermatogenic failure 39
1 gene
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1 of 1 corroborated by 2+ sources
DNAH17(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 31 →
Male infertility spermatogenesis disorder spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Distal arthrogryposis Hecht syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH8(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Hemophilia a Hemophilia a carriers
1 gene
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1 of 1 corroborated by 2+ sources
F8(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Hemophilia a Hemophilia b carriers
1 gene
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1 of 1 corroborated by 2+ sources
F9(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
hypogonadotropic hypogonadism 3 with or without anosmia Male infertility spermatogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
PROKR2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
hypogonadotropic hypogonadism 4 with or without anosmia Male infertility spermatogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
PROK2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
hypomyelinating leukodystrophy 2 Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
GJC2(3)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Ichthyosis Ichthyosis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
FLG(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.