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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Graves ophthalmopathy platelet-type bleeding disorder 18
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Junctional epidermolysis bullosa PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Lipodystrophy PLIN1-related familial partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLIN1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 71 →
Clinodactyly poirier-bienvenu neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Lipodystrophy POLD1-related polyposis and colorectal cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Giant cell arteritis Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 101 →
Clinodactyly primrose syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB20(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly progressive muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Potassium deficiency Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
progressive pseudorheumatoid arthropathy of childhood Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Aortic dissection Congenital aphakia
1 gene
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FOXE3(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital central hypothyroidism Corneal neovascularization
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital corneal opacity syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ZFHX4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital generalized hypercontractile muscle stiffness syndrome Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Developmental delay with ataxia, hypotonia, and facial dysmorphism Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 323 →
Developmental regression IFIH1-related type 1 interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
dilated cardiomyopathy 1EE Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
dilated cardiomyopathy 1KK Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Disorder of sex development Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 143 →
Dna2-related mitochondrial dna deletion syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNA2(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Dysbiosis Giant cell arteritis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Chorea Dyskinesia with orofacial involvement
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chorea Dyskinesia, familial, with facial myokymia
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Dyskinesia, limb and orofacial, infantile-onset Tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.