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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Benign pemphigus Complex spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Complex spastic paraplegia Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cone-rod synaptic disorder Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Congenital factor xiii deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F13A1(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cryohydrocytosis Distal renal tubular acidosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(7)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Donnai-barrow syndrome Intracellular cobalamin metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Chondrosarcoma Eosinophilic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Imperforate anus Peripheral pulmonary artery stenosis
1 gene
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CUL9(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Peritoneal disease Soft tissue neoplasms
1 gene
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ERBB4(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Bone marrow failure syndromes Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
NPM1(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Hypercapnia Small cell carcinoma
1 gene
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NPPA(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Bombay phenotype Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 106 →
Bleeding esophageal varices Potassium deficiency
1 gene
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SST(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Bohring-opitz syndrome Gross motor development delay
1 gene
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1 of 1 corroborated by 2+ sources
ASXL1(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Bronchial disease Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Bronchial disease Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Childhood-onset benign chorea with striatal involvement Tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
childhood-onset nemaline myopathy Nemaline myopathy
1 gene
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TNNI1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chopra-amiel-gordon syndrome syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD17(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 109 →
Chorea Choreoacanthocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Chromosome 10q deletion syndrome Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 323 →
Chromosome xq25 duplication syndrome Semilobar holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
16q24.3 microdeletion syndrome Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly coffin-lowry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.