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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Visual disorder Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Antiphospholipid syndrome X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Dandy-walker syndrome X-linked opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MID1(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Marshall syndrome Wagner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCAN(6)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 248 →
Neuropathy Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(5)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
lethal occipital encephalocele-skeletal dysplasia syndrome Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
CYP26B1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma leukemia, acute lymphoblastic, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma leukemia, acute myeloid, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
FLT3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 3 →
Lipidoses Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
LSS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Carotid intima-media thickness Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
PPARG(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Lipoidosis Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Lipoidosis
1 gene
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LSS(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Carotid intima-media thickness Lipoidosis
1 gene
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PPARG(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Lipidoses mednik syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AP1S1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Lipoidosis mednik syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AP1S1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Burkitt lymphoma Merkel cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MYC(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Carcinoma in situ Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Mouth disease Urinary bladder neck obstruction
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Mouth disease Tongue disorder
1 gene
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ESRRG(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism multiple endocrine neoplasia type 1
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(6)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism multiple endocrine neoplasia type 4
1 gene
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1 of 1 corroborated by 2+ sources
CDKN1B(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
ASAH1-related sphingolipidosis Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
ASAH1-related sphingolipidosis Lipoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.