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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Laryngeal neoplasms Male reproductive system disease
1 gene
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WNT7B(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Carotid artery thrombosis Congenital lactic acidosis
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Congenital lactic acidosis Lobular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Diabetic nephropathy type 1 Ritscher-schinzler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPYSL5(4)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Contracture of multiple joints Skeletal muscle disorder
1 gene
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KIF5B(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Cerebroretinal microangiopathy with calcifications and cysts Tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POT1(6)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Encephalocele Monomelic amyotrophy
1 gene
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CPLANE1(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Congenital cystic eyeball Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GDF6(5)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Erythropoietic protoporphyria X-linked sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
ALAS2(6)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. Cluster 158 →
Myoclonic dystonia Pituitary neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DRD2(2)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Anterior polar cataract Embryonal nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYBB3(3)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Corneal edema Laryngeal disease
1 gene
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0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Coronary syndrome Paralytic strabismus
1 gene
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PHACTR1(1)
0.100 0.250 1.56e-3 2.38e-3 ✓ sig. —
Corticobasal syndrome Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Insulin dependent diabetes mellitus secretory diarrhea syndrome Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cataract-multisystem syndrome Hoyeraal hreidarsson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 64 →
Cataract-multisystem syndrome Telomere-related pulmonary fibrosis and/or bone marrow failure
1 gene
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1 of 1 corroborated by 2+ sources
NOP10(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 64 →
Accessory skin tag Arterial tortuosity syndrome
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Arterial tortuosity syndrome Ruptured abdominal aortic aneurysm
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 66 →
Arterial tortuosity syndrome Ruptured aortic aneurysm
1 gene
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EFEMP2(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 66 →
Beta-hydroxyisobutyryl-coa deacylase deficiency Charcot-marie-tooth disease, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Metaphyseal chondrodysplasia Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRPS1(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Duodenitis Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Duodenitis
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Early onset epilepsy with developmental delay Familial adult myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.