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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Amino acid metabolism disorder Hydroxymethylglutaryl-coa lyase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HMGCL(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase
1 gene
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1 of 1 corroborated by 2+ sources
AHCY(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
hypomyelinating leukodystrophy 9 Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
RARS1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 100 →
Osteonecrosis Williams syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CLIP2(3), GTF2IRD1(4)
0.032 0.083 1.67e-3 2.52e-3 ✓ sig. —
Auditory neuropathy Hypomyelinating leukodystrophy
2 genes
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2 of 2 corroborated by 2+ sources
TUBB4A(4), ATP11A(4)
0.033 0.067 1.65e-3 2.50e-3 ✓ sig. —
Endometrial stromal sarcoma Miller-dieker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. Cluster 223 →
Endometrial stromal sarcoma Weaver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SUZ12(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Ewing sarcoma Neuropathy, congenital hypomyelinating
1 gene
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1 of 1 corroborated by 2+ sources
EGR2(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Facioscapulohumeral muscular dystrophy Immunodeficiency-centromeric instability-facial anomalies syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3B(4)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Bronchus cancer Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA4(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Bilateral microphthalmos Vitamin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(2)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Choanal atresia syndrome Wiedemann-steiner syndrome
1 gene
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CHD7(1)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Amelogenesis imperfecta Tricho-dento-osseous syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLX3(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Night blindness, congenital stationary TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 151 →
Spondyloepimetaphyseal dysplasia Warburg-cinotti syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked cerebral adrenoleukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(3)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked hereditary sensory and autonomic neuropathy with deafness
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(7)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Spondyloepimetaphyseal dysplasia X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Disorder of sex development Gallbladder neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 143 →
Dominant hereditary optic atrophy Ventricular remodeling
1 gene
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1 of 1 corroborated by 2+ sources
OPA1(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amblyopia Dysbiosis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Gallbladder neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(4)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 143 →
Ehlers-Danlos syndrome, spondylocheirodysplastic type Spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Amelogenesis imperfecta Enamel-renal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAM20A(6)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. Cluster 366 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.