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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Memory disorders Nasu-hakola disease
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy neuromuscular disease caused by qualitative or quantitative defects of alpha-dystroglycan
1 gene
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1 of 1 corroborated by 2+ sources
DAG1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 14 →
Agnathia-otocephaly Otosclerosis
1 gene
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PRRX1(1)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Amr syndrome Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Anus neoplasms Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
IFNB1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Apolipoprotein a5 deficiency Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
APOA5(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
immunodeficiency 106, susceptibility to viral infections Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
IFNAR1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 1 →
immunodeficiency 15a Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
immunodeficiency 18 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3E(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 19 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 23 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
PGM3(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
immunodeficiency 25 Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD247(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
immunodeficiency 92 Memory disorders
1 gene
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1 of 1 corroborated by 2+ sources
REL(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
inflammatory bowel disease 25 Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
IL10RB(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Intellectual developmental disorder autism speech dysmorphic Memory disorders
1 gene
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1 of 1 corroborated by 2+ sources
CHD1(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Intellectual developmental disorder movement cerebellar Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Narcolepsy Papillon-lefevre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
purine nucleoside phosphorylase deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
PNP(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Hereditary c1 esterase inhibitor deficiency Ischemic stroke
1 gene
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0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
arthrogryposis multiplex congenita 3, myogenic type Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
bardet-biedl syndrome 11 Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TRIM32(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Beta-aminoisobutyric aciduria Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Beta-sarcoglycanopathy Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SGCB(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy TOR1AIP1-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Narcolepsy Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.