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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1Y
1 gene
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1 of 1 corroborated by 2+ sources
TPM1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 1Z
1 gene
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1 of 1 corroborated by 2+ sources
TNNC1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Arrhythmogenic right ventricular cardiomyopathy dilated cardiomyopathy 2A
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Dyskinesia, limb and orofacial, infantile-onset
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP2(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome Schaaf-yang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAGEL2(5)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome Schindler disease
1 gene
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1 of 1 corroborated by 2+ sources
NAGA(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Separation anxiety disorder
1 gene
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DRD4(1)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 57 →
Conduct disorder severe intellectual disability-poor language-strabismus-grimacing face-long fingers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATAD2B(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 57 →
Liver failure spinocerebellar ataxia, autosomal recessive 31
1 gene
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1 of 1 corroborated by 2+ sources
ATG7(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome succinic semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH5A1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Oxysterol accumulation disorder Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
RD3-related retinopathy Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RD3(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 187 →
RDH5-related retinopathy Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RDH5(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Gaucher disease Intellectual developmental disorder dysmorphic behavioral
1 gene
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MSH6(1)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Bladder disease Male reproductive organ cancer
1 gene
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ZNF385B(1)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Brain malformations Toxic nodular goiter
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(6)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
Bronchiectasis MHC class I deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TAP1(2)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. —
15q11.2 microdeletion syndrome Cortical dysplasia with other brain malformations
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(4)
0.050 0.333 3.31e-3 4.31e-3 ✓ sig. Cluster 176 →
Aneurysm Ocular hypertension
2 genes
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2 of 2 corroborated by 2+ sources
CDKN1A(2), MMP1(2)
0.027 0.074 3.31e-3 4.31e-3 ✓ sig. —
Muscular dystrophy myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 14 →
Muscular dystrophy myopathy, proximal, and ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
MYH2(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.